RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ZSWIM6Q9HCJ5 1215 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 BRMS1Q9HCU9 246 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 TUFT1Q9NNX1 390 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 VPS45Q9NRW7 570 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 YIPF1Q9Y548 306 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 CYP46A1Q9Y6A2 500 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 GREB1Q4ZG55 1949 aa11.11□□□□□ -0.63
TRIM28-210ENST00000597618 DSPP15924 2871 aaKnown RBP11.1□□□□□ -0.63
TRIM28-210ENST00000597618 A0A1W2PRU2 124 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 TMEM8BA6NDV4 472 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 FAM205CA6NFA0 338 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 DPYSL4O14531 572 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 SPATA31C1P0DKV0 1188 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 CYP11B2P19099 503 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 RPL9P32969 192 aaKnown RBP11.1□□□□□ -0.63
TRIM28-210ENST00000597618 KRT2P35908 639 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 GRM5P41594 1212 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 NOVA1P51513 510 aaKnown RBP11.1□□□□□ -0.63
TRIM28-210ENST00000597618 PLCB2Q00722 1185 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 NT5DC1Q5TFE4 455 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 PADI6Q6TGC4 694 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 ALKAL1Q6UXT8 129 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 SUSD3Q96L08 255 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 IFT74Q96LB3 600 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 YTHDC1Q96MU7 727 aaKnown RBP11.1□□□□□ -0.63
TRIM28-210ENST00000597618 NACC1Q96RE7 527 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 KIFC3Q9BVG8 833 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 GJB4Q9NTQ9 266 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 OBP2AQ9NY56 170 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 GTSE1Q9NYZ3 720 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 TNFSF13BQ9Y275 285 aa11.1□□□□□ -0.63
TRIM28-210ENST00000597618 ARHGEF35A5YM69 484 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 EXTL3O43909 919 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 ATG13O75143 517 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 REC8O95072 547 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 FGF19O95750 216 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 KCNE1P15382 129 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 MCM4P33991 863 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 EPHB3P54753 998 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 IRX6P78412 446 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-210ENST00000597618 ZNF252P-AS1Q0IIN9 211 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 NR5A1Q13285 461 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 ZNF568Q3ZCX4 644 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 RNF19BQ6ZMZ0 732 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 CATSPER3Q86XQ3 398 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 TMC8Q8IU68 726 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 ARID3BQ8IVW6 561 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-210ENST00000597618 CEP120Q8N960 986 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 BEST2Q8NFU1 509 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 TTC8Q8TAM2 541 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 WASF1Q92558 559 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 DDX12PQ92771 950 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 TNFRSF25Q93038 417 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 ZC3H10Q96K80 434 aaKnown RBP11.09□□□□□ -0.63
TRIM28-210ENST00000597618 MTMR9Q96QG7 549 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 LARP6Q9BRS8 491 aaKnown RBP11.09□□□□□ -0.63
TRIM28-210ENST00000597618 EDEM2Q9BV94 578 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 LRRC3Q9BY71 257 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 OXCT2Q9BYC2 517 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-210ENST00000597618 CDT1Q9H211 546 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 SMOC1Q9H4F8 434 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 SLC8A2Q9UPR5 921 aa11.09□□□□□ -0.63
TRIM28-210ENST00000597618 SPAG17Q6Q759 2223 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 MED24O75448 989 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 HOXB3P14651 431 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-210ENST00000597618 MARCKSP29966 332 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-210ENST00000597618 HOXC13P31276 330 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 PXNP49023 591 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-210ENST00000597618 OSTNP61366 133 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 SCRN1Q12765 414 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 PTPAQ15257 358 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 ELF2Q15723 593 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 ITPRIPL2Q3MIP1 535 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 ARHGAP15Q53QZ3 475 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 STXBP5Q5T5C0 1151 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 DAB2IPQ5VWQ8 1189 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 SKAP1Q86WV1 359 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 KIFAP3Q92845 792 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 ZFYVE19Q96K21 471 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 ZMAT2Q96NC0 199 aaKnown RBP11.08□□□□□ -0.64
TRIM28-210ENST00000597618 ACAP3Q96P50 834 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 TMEM209Q96SK2 561 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 POLR3CQ9BUI4 534 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-210ENST00000597618 ADAM33Q9BZ11 813 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 CNTN3Q9P232 1028 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 TPCN1Q9ULQ1 816 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 PCDHB8Q9UN66 801 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 DMXL2Q8TDJ6 3036 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 PHLPP2Q6ZVD8 1323 aa11.08□□□□□ -0.64
TRIM28-210ENST00000597618 FREM2Q5SZK8 3169 aa11.07□□□□□ -0.64
TRIM28-210ENST00000597618 K7ERI5 159 aa11.07□□□□□ -0.64
TRIM28-210ENST00000597618 MCF2P10911 925 aa11.07□□□□□ -0.64
TRIM28-210ENST00000597618 WEE1P30291 646 aa11.07□□□□□ -0.64
TRIM28-210ENST00000597618 ALDH1A3P47895 512 aa11.07□□□□□ -0.64
TRIM28-210ENST00000597618 YWHAHQ04917 246 aaPredicted RBP11.07□□□□□ -0.64
TRIM28-210ENST00000597618 TNK2Q07912 1038 aa11.07□□□□□ -0.64
TRIM28-210ENST00000597618 GRSF1Q12849 480 aaKnown RBP eCLIP11.07□□□□□ -0.64
TRIM28-210ENST00000597618 FOXC1Q12948 553 aa11.07□□□□□ -0.64
TRIM28-210ENST00000597618 KARSQ15046 597 aaKnown RBP11.07□□□□□ -0.64
TRIM28-210ENST00000597618 PLK5Q496M5 336 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms