RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 BPIFB4P59827 614 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 RBP5P82980 135 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 CDR2Q01850 454 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 TRIM71Q2Q1W2 868 aaKnown RBP11.26□□□□□ -0.61
SS18-217ENST00000580958 ZNF667Q5HYK9 610 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 TWF2Q6IBS0 349 aaKnown RBP11.26□□□□□ -0.61
SS18-217ENST00000580958 TMEM270Q6UE05 265 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 ARRDC4Q8NCT1 418 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 SMG8Q8ND04 991 aaKnown RBP11.26□□□□□ -0.61
SS18-217ENST00000580958 TRIM58Q8NG06 486 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 DDX1Q92499 740 aaKnown RBP11.26□□□□□ -0.61
SS18-217ENST00000580958 ZMAT2Q96NC0 199 aaKnown RBP11.26□□□□□ -0.61
SS18-217ENST00000580958 ALS2CR12Q96Q35 445 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 HS3ST6Q96QI5 342 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 OSBPL7Q9BZF2 842 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 KLK14Q9P0G3 267 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 NXF1Q9UBU9 619 aaKnown RBP11.26□□□□□ -0.61
SS18-217ENST00000580958 PARP2Q9UGN5 583 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 ITGA11Q9UKX5 1188 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 CNTN6Q9UQ52 1028 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 DERAQ9Y315 318 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 IPPQ9Y573 584 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 NCANO14594 1321 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 KBTBD13C9JR72 458 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 ENC1O14682 589 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 RTN2O75298 545 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 SLU7O95391 586 aaKnown RBP11.25□□□□□ -0.61
SS18-217ENST00000580958 ATP1A1P05023 1023 aaKnown RBP11.25□□□□□ -0.61
SS18-217ENST00000580958 WEE2P0C1S8 567 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 TMEM253P0C7T8 217 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 GZMAP12544 262 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 HOXB3P14651 431 aaPredicted RBP11.25□□□□□ -0.61
SS18-217ENST00000580958 ABCB4P21439 1286 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 GNA15P30679 374 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 ATICP31939 592 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 NOP2P46087 812 aaKnown RBP11.25□□□□□ -0.61
SS18-217ENST00000580958 ZNF132P52740 706 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 YWHAEP62258 255 aaKnown RBP11.25□□□□□ -0.61
SS18-217ENST00000580958 NFX1Q12986 1120 aaKnown RBP11.25□□□□□ -0.61
SS18-217ENST00000580958 CLEC16AQ2KHT3 1053 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 FAM26DQ5JW98 314 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 GLRA4Q5JXX5 417 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 FBXO47Q5MNV8 452 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 ALKAL1Q6UXT8 129 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 ZNF677Q86XU0 584 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 C18orf25Q96B23 403 aaPredicted RBP11.25□□□□□ -0.61
SS18-217ENST00000580958 ARHGEF26Q96DR7 871 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 HPDLQ96IR7 371 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 SDCBP2Q9H190 292 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 ISCUQ9H1K1 167 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 AGO3Q9H9G7 860 aaKnown RBP11.25□□□□□ -0.61
SS18-217ENST00000580958 ERVK-5Q9HDB9 667 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 STARD7Q9NQZ5 370 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 CISHQ9NSE2 258 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 RNF19AQ9NV58 838 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 CNTN3Q9P232 1028 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 TUBGCP4Q9UGJ1 667 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 PHF24Q9UPV7 400 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 PTPN22Q9Y2R2 807 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 PCDHB2Q9Y5E7 798 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 MRFAP1Q9Y605 127 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 SCN5AQ14524 2016 aa11.25□□□□□ -0.61
SS18-217ENST00000580958 A0A0A6YYK5 440 aaPredicted RBP11.24□□□□□ -0.61
SS18-217ENST00000580958 A0A0U1RQG5 324 aaPredicted RBP11.24□□□□□ -0.61
SS18-217ENST00000580958 ANO9A1A5B4 782 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 GRID2IPA4D2P6 1211 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 ANKRD62A6NC57 917 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 PPEF2O14830 753 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 THAP12O43422 761 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 PALMO75781 387 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 MYCP01106 439 aaPredicted RBP11.24□□□□□ -0.61
SS18-217ENST00000580958 FTLP02792 175 aaPredicted RBP11.24□□□□□ -0.61
SS18-217ENST00000580958 GHRP10912 638 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 CD52P31358 61 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 SSTR3P32745 418 aaPredicted RBP11.24□□□□□ -0.61
SS18-217ENST00000580958 AMPD2Q01433 879 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 LPIN1Q14693 890 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 WDR72Q3MJ13 1102 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 ZNF618Q5T7W0 954 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 SLC43A3Q8NBI5 491 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 BEST2Q8NFU1 509 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 CTNNBL1Q8WYA6 563 aaPredicted RBP11.24□□□□□ -0.61
SS18-217ENST00000580958 CARD6Q9BX69 1037 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 BCO2Q9BYV7 579 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 TRPV6Q9H1D0 765 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 PDCL3Q9H2J4 239 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 SMYD3Q9H7B4 428 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 VRTNQ9H8Y1 702 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 CHST12Q9NRB3 414 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 PUF60Q9UHX1 559 aaKnown RBP11.24□□□□□ -0.61
SS18-217ENST00000580958 CDC23Q9UJX2 597 aa11.24□□□□□ -0.61
SS18-217ENST00000580958 UBQLN1Q9UMX0 589 aaKnown RBP11.24□□□□□ -0.61
SS18-217ENST00000580958 TANC1Q9C0D5 1861 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 SMIM28A0A1B0GU29 152 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 GPR182O15218 404 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 TLR3O15455 904 aaKnown RBP11.23□□□□□ -0.61
SS18-217ENST00000580958 NCK2O43639 380 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 STAU1O95793 577 aaKnown RBP11.23□□□□□ -0.61
SS18-217ENST00000580958 CFHP08603 1231 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 P4HA1P13674 534 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms