RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 ECM1Q16610 540 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 NAIF1Q69YI7 327 aaPredicted RBP11.4□□□□□ -0.58
SF3B3-204ENST00000563739 PDZD4Q76G19 769 aaPredicted RBP11.4□□□□□ -0.58
SF3B3-204ENST00000563739 CATSPER3Q86XQ3 398 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 GPIHBP1Q8IV16 184 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 SLFN12Q8IYM2 578 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 DAW1Q8N136 415 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 TTC9BQ8N6N2 239 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 TTC8Q8TAM2 541 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 LSM14BQ9BX40 385 aaKnown RBP11.4□□□□□ -0.58
SF3B3-204ENST00000563739 TTC12Q9H892 705 aaPredicted RBP11.4□□□□□ -0.58
SF3B3-204ENST00000563739 GTSE1Q9NYZ3 720 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 ZMIZ1Q9ULJ6 1067 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 ASCC3Q8N3C0 2202 aaKnown RBP11.4□□□□□ -0.58
SF3B3-204ENST00000563739 ABCA7Q8IZY2 2146 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 CELSR3Q9NYQ7 3312 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 PRRG1O14668 218 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 ZNF263O14978 683 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 AXIN1O15169 862 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 CHADO15335 359 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 OR4Q2P0C623 313 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 MYL4P12829 197 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 SPINK2P20155 84 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 PROZP22891 400 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 GRM5P41594 1212 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 NAMPTP43490 491 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 ARPP19P56211 112 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 TNK2Q07912 1038 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 PON2Q15165 354 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 CACNA1EQ15878 2313 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 DCAF4L1Q3SXM0 396 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 AASDHQ4L235 1098 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-204ENST00000563739 UNQ6494/PRO21346Q6UXR6 183 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 IGSF10Q6WRI0 2623 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 GAREM2Q75VX8 874 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 KDF1Q8NAX2 398 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-204ENST00000563739 GAB3Q8WWW8 586 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 EZH1Q92800 747 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-204ENST00000563739 GATA6Q92908 595 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 SUSD3Q96L08 255 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 UROC1Q96N76 676 aa11.39□□□□□ -0.59
SF3B3-204ENST00000563739 AFF4Q9UHB7 1163 aaKnown RBP11.39□□□□□ -0.59
SF3B3-204ENST00000563739 A0A1W2PRU2 124 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 OTOL1A6NHN0 477 aaPredicted RBP11.38□□□□□ -0.59
SF3B3-204ENST00000563739 ZNF197O14709 1029 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 SYN3O14994 580 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 LARGE1O95461 756 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 XRCC6P12956 609 aaKnown RBP eCLIP11.38□□□□□ -0.59
SF3B3-204ENST00000563739 KCNE1P15382 129 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 CYP11B2P19099 503 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 CALCRLQ16602 461 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 MAPK6Q16659 721 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 ATF7IP2Q5U623 682 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 TPGS2Q68CL5 300 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 FSTL4Q6MZW2 842 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 ZBTB8OSQ8IWT0 167 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 MCPH1Q8NEM0 835 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 MSANTD3Q96H12 275 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 C2orf40Q9H1Z8 148 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 IL21Q9HBE4 155 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 IGSF5Q9NSI5 407 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 CNTN3Q9P232 1028 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 TUBGCP4Q9UGJ1 667 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 PCDHA12Q9UN75 941 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 TNFSF13BQ9Y275 285 aa11.38□□□□□ -0.59
SF3B3-204ENST00000563739 PLXND1Q9Y4D7 1925 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 SCN1AP35498 2009 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 LIG1P18858 919 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 MPLP40238 635 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 TXKP42681 527 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 AARSP49588 968 aaKnown RBP eCLIP11.37□□□□□ -0.595e-6■□□□□ 9.7
SF3B3-204ENST00000563739 ST3GAL1Q11201 340 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 MAPK7Q13164 816 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 LRRC32Q14392 662 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 PPP2R5DQ14738 602 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 PLK5Q496M5 336 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 IL31Q6EBC2 164 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 PSAPL1Q6NUJ1 521 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 PADI6Q6TGC4 694 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 ARID3BQ8IVW6 561 aaPredicted RBP11.37□□□□□ -0.59
SF3B3-204ENST00000563739 DDX1Q92499 740 aaKnown RBP11.37□□□□□ -0.59
SF3B3-204ENST00000563739 DDX12PQ92771 950 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 LOXL4Q96JB6 756 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 TMEM209Q96SK2 561 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 NAP1L4Q99733 375 aaKnown RBP11.37□□□□□ -0.59
SF3B3-204ENST00000563739 ACO2Q99798 780 aaKnown RBP11.37□□□□□ -0.59
SF3B3-204ENST00000563739 POLR3CQ9BUI4 534 aaPredicted RBP11.37□□□□□ -0.59
SF3B3-204ENST00000563739 HAPLN2Q9GZV7 340 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 DUSP15Q9H1R2 295 aaPredicted RBP11.37□□□□□ -0.59
SF3B3-204ENST00000563739 C8orf33Q9H7E9 229 aaPredicted RBP11.37□□□□□ -0.59
SF3B3-204ENST00000563739 FBRSL1Q9HCM7 1045 aaKnown RBP11.37□□□□□ -0.59
SF3B3-204ENST00000563739 HPS4Q9NQG7 708 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 ASAH2Q9NR71 780 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 SH2B1Q9NRF2 756 aaPredicted RBP11.37□□□□□ -0.59
SF3B3-204ENST00000563739 TPCN1Q9ULQ1 816 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 BPTFQ12830 3046 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 HELZP42694 1942 aaKnown RBP11.37□□□□□ -0.59
SF3B3-204ENST00000563739 ANAPC1Q9H1A4 1944 aa11.37□□□□□ -0.59
SF3B3-204ENST00000563739 MYH11P35749 1972 aa11.36□□□□□ -0.59
SF3B3-204ENST00000563739 ANTXRLA6NF34 631 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms