RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 ZNF606Q8WXB4 792 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 ZNF653Q96CK0 615 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 CYFIP2Q96F07 1278 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 VCPIP1Q96JH7 1222 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 TSPAN18Q96SJ8 248 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 PARD6BQ9BYG5 372 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 CELF4Q9BZC1 486 aaKnown RBP13.78□□□□□ -0.2
SNX1-211ENST00000560829 EPC1Q9H2F5 836 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 CYP3A43Q9HB55 503 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 ARGLU1Q9NWB6 273 aaPredicted RBP13.78□□□□□ -0.2
SNX1-211ENST00000560829 SNTG2Q9NY99 539 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 RAB21Q9UL25 225 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 CLSTN1O94985 981 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 CCND3P30281 292 aaPredicted RBP13.78□□□□□ -0.2
SNX1-211ENST00000560829 YARSP54577 528 aaKnown RBP13.78□□□□□ -0.2
SNX1-211ENST00000560829 ZBTB6Q15916 424 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 WDR72Q3MJ13 1102 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 ALKAL1Q6UXT8 129 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 MON1BQ7L1V2 547 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 PHF13Q86YI8 300 aaPredicted RBP13.78□□□□□ -0.2
SNX1-211ENST00000560829 ACTRT1Q8TDG2 376 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 DPP3Q9NY33 737 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 CNTN3Q9P232 1028 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 PCDHGC3Q9UN70 934 aa13.78□□□□□ -0.2
SNX1-211ENST00000560829 PIN4Q9Y237 131 aaKnown RBP13.78□□□□□ -0.2
SNX1-211ENST00000560829 KCNK3O14649 394 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 THAP12O43422 761 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 LSM8O95777 96 aaKnown RBP13.77□□□□□ -0.21
SNX1-211ENST00000560829 GNRH1P01148 92 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 HMGCRP04035 888 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 WEE2P0C1S8 567 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 P4HA1P13674 534 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 CD58P19256 250 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 POLR2BP30876 1174 aaKnown RBP13.77□□□□□ -0.21
SNX1-211ENST00000560829 MAP2K2P36507 400 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 NSFP46459 744 aaKnown RBP13.77□□□□□ -0.21
SNX1-211ENST00000560829 MRPS6P82932 125 aaKnown RBP13.77□□□□□ -0.21
SNX1-211ENST00000560829 XKR4Q5GH76 650 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 UBXN11Q5T124 520 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 NAA35Q5VZE5 725 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 GDF6Q6KF10 455 aaPredicted RBP13.77□□□□□ -0.21
SNX1-211ENST00000560829 SERINC5Q86VE9 423 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 ZNF564Q8TBZ8 553 aaPredicted RBP13.77□□□□□ -0.21
SNX1-211ENST00000560829 KIF12Q96FN5 646 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 RPS6KC1Q96S38 1066 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 PDCL3Q9H2J4 239 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 NXF1Q9UBU9 619 aaKnown RBP13.77□□□□□ -0.21
SNX1-211ENST00000560829 CNOT8Q9UFF9 292 aaKnown RBP13.77□□□□□ -0.21
SNX1-211ENST00000560829 POLIQ9UNA4 740 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 ALG6Q9Y672 507 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 CASP8AP2Q9UKL3 1982 aa13.77□□□□□ -0.21
SNX1-211ENST00000560829 TARSL2A2RTX5 802 aaKnown RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 MIF4GDA9UHW6 222 aaKnown RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 DDX3YO15523 660 aaKnown RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 ASGR1P07306 291 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 CFHP08603 1231 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 PAEPP09466 180 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 ELNP15502 786 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 CDH5P33151 784 aaPredicted RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 CLCN6P51797 869 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 WDR93Q6P2C0 686 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 RSPH3Q86UC2 560 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 RASGEF1CQ8N431 466 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 PXYLP1Q8TE99 480 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 CPA5Q8WXQ8 436 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 HPDLQ96IR7 371 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 MS4A14Q96JA4 679 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 ZMAT2Q96NC0 199 aaKnown RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 ZSWIM1Q9BR11 485 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 NUP85Q9BW27 656 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 TRIM6Q9C030 488 aaPredicted RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 ZNF518BQ9C0D4 1074 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 SDCBP2Q9H190 292 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 NXF3Q9H4D5 531 aaKnown RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 TTC7AQ9ULT0 858 aaPredicted RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 AGAP1Q9UPQ3 857 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 TRPV2Q9Y5S1 764 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 CCDC151A5D8V7 595 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 M0QZ92 97 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 ATMINO43313 823 aaPredicted RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 TRPA1O75762 1119 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 C1QBPQ07021 282 aaKnown RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 C2orf54Q08AI8 447 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 PTP4A2Q12974 167 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 BRD3Q15059 726 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 KCNA10Q16322 511 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 SCARA5Q6ZMJ2 495 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 FAM228AQ86W67 206 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 TTC39CQ8N584 583 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 LRRC52Q8N7C0 313 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 PCSK9Q8NBP7 692 aaKnown RBP13.76□□□□□ -0.21
SNX1-211ENST00000560829 SELENOOQ9BVL4 669 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 CARD9Q9H257 536 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 EHD2Q9NZN4 543 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 TMEM59LQ9UK28 342 aa13.76□□□□□ -0.21
SNX1-211ENST00000560829 SCN10AQ9Y5Y9 1956 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 ANK1P16157 1881 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 CILPO75339 1184 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 RECQL4O94761 1208 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 KCNE1P15382 129 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms