RNA–Protein interactions for RNA: ENST00000553570.5

ATXN3-222, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-222	ENST00000553570	LAMA4	Q16363	1823 aa		5.52	□□□□□ -1.53
ATXN3-222	ENST00000553570	SMCHD1	A6NHR9	2005 aa		5.52	□□□□□ -1.53
ATXN3-222	ENST00000553570	ZSWIM8	A7E2V4	1837 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	SLC12A8	A0AV02	714 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	ALG1L2	C9J202	215 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	KRIT1	O00522	736 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	GPAA1	O43292	621 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	FKBP9	O95302	570 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	GH2	P01242	217 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	SLC3A2	P08195	630 aa	Known RBP	5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	HSPA8	P11142	646 aa	Known RBP	5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	LSS	P48449	732 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	ITGA1	P56199	1179 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	PPIL2	Q13356	520 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	MCMDC2	Q4G0Z9	681 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	RRP12	Q5JTH9	1297 aa	Known RBP	5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	PRR31	Q5SQ13	230 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	RNF219	Q5W0B1	726 aa	Predicted RBP	5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	CTR9	Q6PD62	1173 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	CD300LD	Q6UXZ3	194 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	FKBP9P1	Q75LS8	142 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	SKAP1	Q86WV1	359 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	NOSTRIN	Q8IVI9	506 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	RBM12B	Q8IXT5	1001 aa	Known RBP	5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	ZNF444	Q8N0Y2	327 aa	Predicted RBP	5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	CARF	Q8N187	725 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	ZBTB8A	Q96BR9	441 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	FAM227B	Q96M60	508 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	CD244	Q9BZW8	370 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	NAPB	Q9H115	298 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	AS3MT	Q9HBK9	375 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	EMC7	Q9NPA0	242 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	OXSM	Q9NWU1	459 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	SLC5A4	Q9NY91	659 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	TMOD4	Q9NZQ9	345 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	HERC5	Q9UII4	1024 aa	Known RBP	5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	ZNF112	Q9UJU3	913 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	SRPK3	Q9UPE1	567 aa		5.51	□□□□□ -1.53
ATXN3-222	ENST00000553570	BAZ2B	Q9UIF8	2168 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	PLXNA1	Q9UIW2	1896 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	BTBD19	C9JJ37	291 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	SMIM22	K7EJ46	135 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	PDHX	O00330	501 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	DVL2	O14641	736 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	SLC27A2	O14975	620 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	CA12	O43570	354 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	KATNA1	O75449	491 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	KRT37	O76014	449 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	LRG1	P02750	347 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	ASNS	P08243	561 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	GNAT2	P19087	354 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	THBS2	P35442	1172 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	STAT5A	P42229	794 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	KCNC1	P48547	511 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	HMGCS2	P54868	508 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	TMPRSS15	P98073	1019 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	EXOSC10	Q01780	885 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	ADAM9	Q13443	819 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	SMAD4	Q13485	552 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	RRP1B	Q14684	758 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	KIF22	Q14807	665 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	SEPT2	Q15019	361 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	SEC23A	Q15436	765 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	SHROOM1	Q2M3G4	852 aa	Predicted RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	TTC22	Q5TAA0	569 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	C12orf60	Q5U649	245 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	TMED8	Q6PL24	325 aa	Predicted RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	CENPQ	Q7L2Z9	268 aa	Predicted RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	FASTKD5	Q7L8L6	764 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	CCAR1	Q8IX12	1150 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	KY	Q8NBH2	561 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	SLC44A5	Q8NCS7	719 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	COG1	Q8WTW3	980 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	BRI3BP	Q8WY22	251 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	PTPN18	Q99952	460 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	SPATA25	Q9BR10	227 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	BOC	Q9BWV1	1114 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	TRIM8	Q9BZR9	551 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	R3HDML	Q9H3Y0	253 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	SMOC1	Q9H4F8	434 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	INCENP	Q9NQS7	918 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	HELLS	Q9NRZ9	838 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	HSPBP1	Q9NZL4	362 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	ASH2L	Q9UBL3	628 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	CPA4	Q9UI42	421 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	APOBEC2	Q9Y235	224 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	TELO2	Q9Y4R8	837 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	DDX60L	Q5H9U9	1706 aa	Known RBP	5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570	MYH7B	A7E2Y1	1941 aa		5.5	□□□□□ -1.53
ATXN3-222	ENST00000553570		A0A0D9SFI3	127 aa		5.49	□□□□□ -1.53
ATXN3-222	ENST00000553570	HIP1	O00291	1037 aa		5.49	□□□□□ -1.53
ATXN3-222	ENST00000553570	CXCL11	O14625	94 aa		5.49	□□□□□ -1.53
ATXN3-222	ENST00000553570	TGM5	O43548	720 aa		5.49	□□□□□ -1.53
ATXN3-222	ENST00000553570	NOBOX	O60393	691 aa		5.49	□□□□□ -1.53
ATXN3-222	ENST00000553570	RANBP6	O60518	1105 aa	Known RBP	5.49	□□□□□ -1.53
ATXN3-222	ENST00000553570	PRDM1	O75626	825 aa		5.49	□□□□□ -1.53
ATXN3-222	ENST00000553570	LTF	P02788	710 aa		5.49	□□□□□ -1.53
ATXN3-222	ENST00000553570	KPNA1	P52294	538 aa	Predicted RBP	5.49	□□□□□ -1.53
ATXN3-222	ENST00000553570	EPHA5	P54756	1037 aa		5.49	□□□□□ -1.53
ATXN3-222	ENST00000553570	HAND2	P61296	217 aa		5.49	□□□□□ -1.53

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