RNA–Protein interactions for RNA: ENST00000553570.5

ATXN3-222, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-222	ENST00000553570	AEBP2	Q6ZN18	517 aa	Predicted RBP	22.26	■■□□□ 1.15
ATXN3-222	ENST00000553570	CHIC1	Q5VXU3	224 aa		21.49	■■□□□ 1.03
ATXN3-222	ENST00000553570	PHF23	Q9BUL5	403 aa	Predicted RBP	18.93	■□□□□ 0.62
ATXN3-222	ENST00000553570	SENP3	Q9H4L4	574 aa	Predicted RBP	18.81	■□□□□ 0.6
ATXN3-222	ENST00000553570	FOXD1	Q16676	465 aa		17.56	■□□□□ 0.4
ATXN3-222	ENST00000553570	PLPPR3	Q6T4P5	718 aa		17.31	■□□□□ 0.36
ATXN3-222	ENST00000553570	PPP6R1	Q9UPN7	881 aa		16.77	■□□□□ 0.28
ATXN3-222	ENST00000553570	ADRA2B	P18089	450 aa		16.69	■□□□□ 0.26
ATXN3-222	ENST00000553570	PIAS4	Q8N2W9	510 aa	Predicted RBP	16.43	■□□□□ 0.22
ATXN3-222	ENST00000553570	POTED	Q86YR6	584 aa		16.3	■□□□□ 0.2
ATXN3-222	ENST00000553570	MSH5	O43196	834 aa		16.19	■□□□□ 0.18
ATXN3-222	ENST00000553570	PPP4R3CP	Q6ZMV5	832 aa		15.25	■□□□□ 0.03
ATXN3-222	ENST00000553570	MAPK8IP2	Q13387	824 aa	Predicted RBP	15.23	■□□□□ 0.03
ATXN3-222	ENST00000553570	SCAF1	Q9H7N4	1312 aa	Known RBP	15.18	■□□□□ 0.02
ATXN3-222	ENST00000553570	DMRT2	Q9Y5R5	561 aa		15.03	■□□□□ -0
ATXN3-222	ENST00000553570	CNKSR2	Q8WXI2	1034 aa		14.86	□□□□□ -0.03
ATXN3-222	ENST00000553570	NCBP3	Q53F19	620 aa	Known RBP	14.72	□□□□□ -0.05
ATXN3-222	ENST00000553570	KCNA4	P22459	653 aa		14.69	□□□□□ -0.06
ATXN3-222	ENST00000553570	HOXD11	P31277	338 aa	Predicted RBP	14.66	□□□□□ -0.06
ATXN3-222	ENST00000553570	RNF216	Q9NWF9	866 aa	Predicted RBP	14.63	□□□□□ -0.07
ATXN3-222	ENST00000553570	NPM3	O75607	178 aa	Known RBP	14.6	□□□□□ -0.07
ATXN3-222	ENST00000553570	DNAJC5B	Q9UF47	199 aa		14.28	□□□□□ -0.12
ATXN3-222	ENST00000553570	DCAF8L1	A6NGE4	600 aa		14.26	□□□□□ -0.13
ATXN3-222	ENST00000553570	RNF39	Q9H2S5	420 aa		13.92	□□□□□ -0.18
ATXN3-222	ENST00000553570	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.89	□□□□□ -0.19
ATXN3-222	ENST00000553570	SLC4A2	P04920	1241 aa		13.87	□□□□□ -0.19
ATXN3-222	ENST00000553570	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.86	□□□□□ -0.19
ATXN3-222	ENST00000553570	CACNB1	Q02641	598 aa	Predicted RBP	13.73	□□□□□ -0.21
ATXN3-222	ENST00000553570		U3KPZ7	1027 aa	Predicted RBP	13.71	□□□□□ -0.21
ATXN3-222	ENST00000553570	C1QBP	Q07021	282 aa	Known RBP	13.69	□□□□□ -0.22
ATXN3-222	ENST00000553570	ZBTB22	O15209	634 aa		13.56	□□□□□ -0.24
ATXN3-222	ENST00000553570	FOXD4L1	Q9NU39	408 aa		13.53	□□□□□ -0.24
ATXN3-222	ENST00000553570	MYCN	P04198	464 aa	Predicted RBP	13.44	□□□□□ -0.26
ATXN3-222	ENST00000553570	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.38	□□□□□ -0.27
ATXN3-222	ENST00000553570	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.36	□□□□□ -0.27
ATXN3-222	ENST00000553570	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.36	□□□□□ -0.27
ATXN3-222	ENST00000553570	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.33	□□□□□ -0.28
ATXN3-222	ENST00000553570	CSRNP3	Q8WYN3	585 aa		13.29	□□□□□ -0.28
ATXN3-222	ENST00000553570	CAPN15	O75808	1086 aa		13.26	□□□□□ -0.29
ATXN3-222	ENST00000553570	APLP2	Q06481	763 aa		13.24	□□□□□ -0.29
ATXN3-222	ENST00000553570	EHMT2	Q96KQ7	1210 aa		13.23	□□□□□ -0.29
ATXN3-222	ENST00000553570	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.19	□□□□□ -0.3
ATXN3-222	ENST00000553570	DSG3	P32926	999 aa		13.17	□□□□□ -0.3
ATXN3-222	ENST00000553570	TRH	P20396	242 aa	Predicted RBP	13.15	□□□□□ -0.3
ATXN3-222	ENST00000553570	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.15	□□□□□ -0.3
ATXN3-222	ENST00000553570	ATXN8OS	P0DMR3	200 aa		13.1	□□□□□ -0.31
ATXN3-222	ENST00000553570	ABCB7	O75027	752 aa		13.01	□□□□□ -0.33
ATXN3-222	ENST00000553570	POLA2	Q14181	598 aa		12.93	□□□□□ -0.34
ATXN3-222	ENST00000553570	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.64	□□□□□ -0.39
ATXN3-222	ENST00000553570	POTEH	Q6S545	545 aa		12.63	□□□□□ -0.39
ATXN3-222	ENST00000553570	MKRN4P	Q13434	485 aa	Predicted RBP	12.6	□□□□□ -0.39
ATXN3-222	ENST00000553570	FBLN2	P98095	1184 aa		12.5	□□□□□ -0.41
ATXN3-222	ENST00000553570	OSCAR	Q8IYS5	282 aa		12.49	□□□□□ -0.41
ATXN3-222	ENST00000553570	RBM42	Q9BTD8	480 aa	Known RBP	12.46	□□□□□ -0.41
ATXN3-222	ENST00000553570	SPDYE2B	A6NHP3	402 aa		12.33	□□□□□ -0.44
ATXN3-222	ENST00000553570	SPDYE6	P0CI01	402 aa		12.33	□□□□□ -0.44
ATXN3-222	ENST00000553570	SPDYE2	Q495Y8	402 aa		12.33	□□□□□ -0.44
ATXN3-222	ENST00000553570	AKT1S1	Q96B36	256 aa		12.31	□□□□□ -0.44
ATXN3-222	ENST00000553570	SSUH2	Q9Y2M2	353 aa		12.27	□□□□□ -0.45
ATXN3-222	ENST00000553570	ZNF692	Q9BU19	519 aa	Predicted RBP	12.24	□□□□□ -0.45
ATXN3-222	ENST00000553570	REM2	Q8IYK8	340 aa	Predicted RBP	12.21	□□□□□ -0.45
ATXN3-222	ENST00000553570	SPDYE4	A6NLX3	237 aa		12.13	□□□□□ -0.47
ATXN3-222	ENST00000553570	PITPNM1	O00562	1244 aa		12.08	□□□□□ -0.48
ATXN3-222	ENST00000553570	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
ATXN3-222	ENST00000553570	CHRDL2	Q6WN34	429 aa		12.07	□□□□□ -0.48
ATXN3-222	ENST00000553570	PROM2	Q8N271	834 aa		12.01	□□□□□ -0.49
ATXN3-222	ENST00000553570	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.99	□□□□□ -0.49
ATXN3-222	ENST00000553570	FKBP8	Q14318	412 aa		11.94	□□□□□ -0.5
ATXN3-222	ENST00000553570	CLEC11A	Q9Y240	323 aa		11.93	□□□□□ -0.5
ATXN3-222	ENST00000553570	FXR2	P51116	673 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
ATXN3-222	ENST00000553570	PIP4P2	Q8N4L2	257 aa		11.9	□□□□□ -0.5
ATXN3-222	ENST00000553570	PRR29	P0C7W0	189 aa		11.81	□□□□□ -0.52
ATXN3-222	ENST00000553570	STAG3	Q9UJ98	1225 aa		11.81	□□□□□ -0.52
ATXN3-222	ENST00000553570	PRKAR2A	P13861	404 aa	Known RBP	11.74	□□□□□ -0.53
ATXN3-222	ENST00000553570	CHADL	Q6NUI6	762 aa		11.72	□□□□□ -0.53
ATXN3-222	ENST00000553570	CREBZF	Q9NS37	354 aa		11.69	□□□□□ -0.54
ATXN3-222	ENST00000553570	MNX1	P50219	401 aa	Predicted RBP	11.59	□□□□□ -0.55
ATXN3-222	ENST00000553570	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.58	□□□□□ -0.56
ATXN3-222	ENST00000553570	SP7	Q8TDD2	431 aa	Predicted RBP	11.54	□□□□□ -0.56
ATXN3-222	ENST00000553570	FBXO3	Q9UK99	471 aa		11.54	□□□□□ -0.56
ATXN3-222	ENST00000553570	C19orf67	A6NJJ6	358 aa		11.52	□□□□□ -0.57
ATXN3-222	ENST00000553570	EVX2	Q03828	476 aa		11.52	□□□□□ -0.57
ATXN3-222	ENST00000553570	HAX1	O00165	279 aa		11.51	□□□□□ -0.57
ATXN3-222	ENST00000553570	MIER1	Q8N108	512 aa		11.49	□□□□□ -0.57
ATXN3-222	ENST00000553570	VASP	P50552	380 aa	Predicted RBP	11.43	□□□□□ -0.58
ATXN3-222	ENST00000553570	PLCD3	Q8N3E9	789 aa		11.42	□□□□□ -0.58
ATXN3-222	ENST00000553570	NPM1	P06748	294 aa	Known RBP eCLIP	11.39	□□□□□ -0.59
ATXN3-222	ENST00000553570	CD44	P16070	742 aa	Known RBP	11.38	□□□□□ -0.59
ATXN3-222	ENST00000553570	PLEKHG5	O94827	1062 aa		11.37	□□□□□ -0.59
ATXN3-222	ENST00000553570	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.32	□□□□□ -0.6
ATXN3-222	ENST00000553570	NUBP1	P53384	320 aa		11.31	□□□□□ -0.6
ATXN3-222	ENST00000553570	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.31	□□□□□ -0.6
ATXN3-222	ENST00000553570	RASEF	Q8IZ41	740 aa		11.3	□□□□□ -0.6
ATXN3-222	ENST00000553570	ZRANB1	Q9UGI0	708 aa		11.28	□□□□□ -0.6
ATXN3-222	ENST00000553570	ZNF579	Q8NAF0	562 aa	Known RBP	11.26	□□□□□ -0.61
ATXN3-222	ENST00000553570	GABBR2	O75899	941 aa		11.23	□□□□□ -0.61
ATXN3-222	ENST00000553570	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.22	□□□□□ -0.61
ATXN3-222	ENST00000553570	CCDC61	Q9Y6R9	512 aa		11.22	□□□□□ -0.61
ATXN3-222	ENST00000553570	PAK3	O75914	559 aa	Predicted RBP	11.21	□□□□□ -0.61
ATXN3-222	ENST00000553570	KLHL34	Q8N239	644 aa		11.21	□□□□□ -0.61

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