RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 ASAH2Q9NR71 780 aa13.84□□□□□ -0.19
LINC00643-202ENST00000553426 CPSF3Q9UKF6 684 aaKnown RBP13.84□□□□□ -0.19
LINC00643-202ENST00000553426 DERAQ9Y315 318 aa13.84□□□□□ -0.19
LINC00643-202ENST00000553426 TIMM13Q9Y5L4 95 aaPredicted RBP13.84□□□□□ -0.19
LINC00643-202ENST00000553426 CLIC4Q9Y696 253 aa13.84□□□□□ -0.19
LINC00643-202ENST00000553426 DNAH14Q0VDD8 3507 aa13.84□□□□□ -0.19
LINC00643-202ENST00000553426 DOCK6Q96HP0 2047 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 NCAM2O15394 837 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 ADRB2P07550 413 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 CEBPBP17676 345 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 TYMPP19971 482 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 NMT1P30419 496 aaKnown RBP13.83□□□□□ -0.2
LINC00643-202ENST00000553426 ALDH1A3P47895 512 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 AARSP49588 968 aaKnown RBP eCLIP13.83□□□□□ -0.2
LINC00643-202ENST00000553426 TMEM132DQ14C87 1099 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 UBXN2BQ14CS0 331 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 POSTNQ15063 836 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 SPATA1Q5VX52 437 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 OVOS1Q6IE37 1185 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 JADE1Q6IE81 842 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 ZC3H14Q6PJT7 736 aaKnown RBP13.83□□□□□ -0.2
LINC00643-202ENST00000553426 RNF19BQ6ZMZ0 732 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 DYMQ7RTS9 669 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 C1orf210Q8IVY1 113 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 KCNG4Q8TDN1 519 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 LRRC15Q8TF66 581 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 HVCN1Q96D96 273 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 NELL2Q99435 816 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 FOXQ1Q9C009 403 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 ST6GALNAC4Q9H4F1 302 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 MRPL44Q9H9J2 332 aaKnown RBP13.83□□□□□ -0.2
LINC00643-202ENST00000553426 SEL1LQ9UBV2 794 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 AGO2Q9UKV8 859 aaKnown RBP13.83□□□□□ -0.2
LINC00643-202ENST00000553426 EXOC7Q9UPT5 735 aa13.83□□□□□ -0.2
LINC00643-202ENST00000553426 MRPS17Q9Y2R5 130 aaKnown RBP13.83□□□□□ -0.2
LINC00643-202ENST00000553426 SRPRBQ9Y5M8 271 aaKnown RBP13.83□□□□□ -0.2
LINC00643-202ENST00000553426 FAM189A1O60320 539 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 MYL4P12829 197 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 GAP43P17677 238 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 SYT1P21579 422 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 MAGEA9P43362 315 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 ACOT2P49753 483 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 EPHB3P54753 998 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 LILRA4P59901 499 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 POU5F1Q01860 360 aaKnown RBP13.82□□□□□ -0.2
LINC00643-202ENST00000553426 CEBPZQ03701 1054 aaKnown RBP13.82□□□□□ -0.2
LINC00643-202ENST00000553426 GPR17Q13304 367 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 MYBPC2Q14324 1141 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 ZC2HC1CQ53FD0 456 aaPredicted RBP13.82□□□□□ -0.2
LINC00643-202ENST00000553426 PRSS36Q5K4E3 855 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 ZBTB41Q5SVQ8 909 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 CCDC73Q6ZRK6 1079 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 ZNF720Q7Z2F6 126 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 METTL23Q86XA0 190 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 POMGNT1Q8WZA1 660 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 INTS4Q96HW7 963 aaKnown RBP13.82□□□□□ -0.2
LINC00643-202ENST00000553426 OSBPL6Q9BZF3 934 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 GPR88Q9GZN0 384 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 SLITRK6Q9H5Y7 841 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 BRD9Q9H8M2 597 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 FBXO2Q9UK22 296 aaPredicted RBP13.82□□□□□ -0.2
LINC00643-202ENST00000553426 DSEQ9UL01 958 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 C2CD2Q9Y426 696 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 SPTBN4Q9H254 2564 aa13.82□□□□□ -0.2
LINC00643-202ENST00000553426 TULP1O00294 542 aaPredicted RBP13.81□□□□□ -0.2
LINC00643-202ENST00000553426 GUCY2FP51841 1108 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 PTPAQ15257 358 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 C9orf57Q5W0N0 161 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 TANGO2Q6ICL3 276 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 SLC39A4Q6P5W5 647 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 ZNF852Q6ZMS4 543 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 SFR1Q86XK3 245 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 DNASE1L2Q92874 299 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 SMARCD2Q92925 531 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 IRF7Q92985 503 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 E2F7Q96AV8 911 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 TCEAL4Q96EI5 215 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 SENP8Q96LD8 212 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 PGLYRP2Q96PD5 576 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 FIZ1Q96SL8 496 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 DDX23Q9BUQ8 820 aaKnown RBP13.81□□□□□ -0.2
LINC00643-202ENST00000553426 TRMT61BQ9BVS5 477 aaKnown RBP13.81□□□□□ -0.2
LINC00643-202ENST00000553426 ZSCAN16Q9H4T2 348 aaPredicted RBP13.81□□□□□ -0.2
LINC00643-202ENST00000553426 CEP72Q9P209 647 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 YIPF1Q9Y548 306 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 PCDHB13Q9Y5F0 798 aa13.81□□□□□ -0.2
LINC00643-202ENST00000553426 PTPRZ1P23471 2315 aaPredicted RBP13.81□□□□□ -0.2
LINC00643-202ENST00000553426 PDCD11Q14690 1871 aaKnown RBP13.8□□□□□ -0.2
LINC00643-202ENST00000553426 MYH15Q9Y2K3 1946 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 FAM170BA6NMN3 283 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 ANKRD63C9JTQ0 380 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 PIRO00625 290 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 IL18RAPO95256 599 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 FGF19O95750 216 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 NFICP08651 508 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 OR4Q2P0C623 313 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 STAT6P42226 847 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 EPHA5P54756 1037 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 DUSP4Q13115 394 aa13.8□□□□□ -0.2
LINC00643-202ENST00000553426 RESTQ13127 1097 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms