RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 NKRFO15226 690 aaKnown RBP eCLIP4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PCDHGA12O60330 932 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 MGEA5O60502 916 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 TLR2O60603 784 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PQBP1O60828 265 aaKnown RBP4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PPFIA4O75335 1185 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 ADRB1P08588 477 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 INSRRP14616 1297 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 MYL6BP14649 208 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 IGFBP6P24592 240 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-208ENST00000551691 HTR3AP46098 478 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 KCNC1P48547 511 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 TRAPPC10P48553 1259 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 GJA9P57773 515 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 FAM193AP78312 1265 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 TMEM62Q0P6H9 643 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 TEFQ10587 303 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 GRAPQ13588 217 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 KIF22Q14807 665 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 SHHQ15465 462 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 FSCN1Q16658 493 aaKnown RBP4.5□□□□□ -1.69
LIMA1-208ENST00000551691 CCL15Q16663 113 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 KIAA0753Q2KHM9 967 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 C9orf50Q5SZB4 431 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 WDR78Q5VTH9 848 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 STEAP3Q658P3 488 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 CREB3L3Q68CJ9 461 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 BICRALQ6AI39 1079 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 CC2D1AQ6P1N0 951 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-208ENST00000551691 DARS2Q6PI48 645 aaKnown RBP4.5□□□□□ -1.69
LIMA1-208ENST00000551691 ZNF354CQ86Y25 554 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PHYKPLQ8IUZ5 450 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 LZTR1Q8N653 840 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 ZBTB34Q8NCN2 500 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 HIPK4Q8NE63 616 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 AGBL3Q8NEM8 1001 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 MYRIPQ8NFW9 859 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 GRAPLQ8TC17 118 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-208ENST00000551691 JADE3Q92613 823 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 ANKS1AQ92625 1134 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 GJA10Q969M2 543 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 RAX2Q96IS3 184 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 TAAR9Q96RI9 348 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 SELENOOQ9BVL4 669 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 ANO3Q9BYT9 981 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 CD244Q9BZW8 370 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 AP5M1Q9H0R1 490 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 DEFB129Q9H1M3 183 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 MS4A5Q9H3V2 200 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PTPRHQ9HD43 1115 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 GNL3LQ9NVN8 582 aaKnown RBP4.5□□□□□ -1.69
LIMA1-208ENST00000551691 MIS18AQ9NYP9 233 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PHTF1Q9UMS5 762 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 RWDD3Q9Y3V2 267 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PCDHGA9Q9Y5G4 932 aaKnown RBP4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PCDHGA8Q9Y5G5 932 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PCDHGA7Q9Y5G6 932 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PCDHGA6Q9Y5G7 932 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PCDHGA3Q9Y5H0 932 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 PCDHGA2Q9Y5H1 932 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 MYPNQ86TC9 1320 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 COL4A1P02462 1669 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 ZC3H12DA2A288 527 aaKnown RBP4.49□□□□□ -1.69
LIMA1-208ENST00000551691 BTBD19C9JJ37 291 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 MAN2B1O00754 1011 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 TPP1O14773 563 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 FOXP2O15409 715 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 MAFGO15525 162 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 CLASP2O75122 1294 aaKnown RBP4.49□□□□□ -1.69
LIMA1-208ENST00000551691 NDUFS2O75306 463 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 DBHP09172 617 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 CLEC2LP0C7M8 214 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 SETSIPP0DME0 302 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 ATF2P15336 505 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 RHCEP18577 417 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 AGXTP21549 392 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 MAPKAPK2P49137 400 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 CACNB3P54284 484 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 BCAR1P56945 870 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 UBXN2AP68543 259 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 RHDQ02161 417 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 BIRC3Q13489 604 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 LLGL1Q15334 1064 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 INO80DQ53TQ3 878 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-208ENST00000551691 CT83Q5H943 113 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 TMEM31Q5JXX7 168 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 NT5DC1Q5TFE4 455 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 PRAMEF9Q5VWM5 478 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 BTBD8Q5XKL5 378 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 C17orf99Q6UX52 265 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 KCTD1Q719H9 257 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 FRMD5Q7Z6J6 570 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 NLRP10Q86W26 655 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 TICAM2Q86XR7 235 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 DENND1CQ8IV53 801 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 WDR48Q8TAF3 677 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 AUTS2Q8WXX7 1259 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 RUNDC1Q96C34 613 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 TUBGCP5Q96RT8 1024 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 ACO2Q99798 780 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms