RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 MARCH7Q9H992 704 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 ALG13Q9NP73 1137 aaKnown RBP9.36□□□□□ -0.91
VPS13D-212ENST00000543766 TMOD3Q9NYL9 352 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 FPGT-TNNI3KV9GXZ4 949 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 CCDC78A2IDD5 438 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 C16orf96A6NNT2 1141 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 TREHO43280 583 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 DBTP11182 482 aaKnown RBP9.36□□□□□ -0.91
VPS13D-212ENST00000543766 ATP6V1B1P15313 513 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 MAPK1P28482 360 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 VPS72Q15906 364 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 HADHQ16836 314 aaKnown RBP9.36□□□□□ -0.91
VPS13D-212ENST00000543766 FYB2Q5VWT5 728 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 TMC5Q6UXY8 1006 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 HEATR4Q86WZ0 1026 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 TPH2Q8IWU9 490 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 MNTQ99583 582 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 CNPY3Q9BT09 278 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 RAD21L1Q9H4I0 556 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 NLRC4Q9NPP4 1024 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 ABI2Q9NYB9 513 aaPredicted RBP9.36□□□□□ -0.91
VPS13D-212ENST00000543766 PCOLCE2Q9UKZ9 415 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 FAM208AQ9UK61 1670 aaKnown RBP9.36□□□□□ -0.91
VPS13D-212ENST00000543766 A0A0J9YVX5 310 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 ESYT3A0FGR9 886 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 FAM47E-STBD1D6RA91 191 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 RIMBP2O15034 1052 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 TRAPPC3O43617 180 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 IFNB1P01574 187 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 FOSL2P15408 326 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 PHKA1P46020 1223 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 CAPZA2P47755 286 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 TUBB4BP68371 445 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 MAP3K12Q12852 859 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 RESTQ13127 1097 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 ADAM9Q13443 819 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 DAB2IPQ5VWQ8 1189 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 RNF19BQ6ZMZ0 732 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 TBC1D19Q8N5T2 526 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 SNX31Q8N9S9 440 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 C3orf58Q8NDZ4 430 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 PHF21AQ96BD5 680 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 ZNF570Q96NI8 536 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 BRINP2Q9C0B6 783 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 SUGCTQ9HAC7 445 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 AP3M1Q9Y2T2 418 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 K7ENM7 598 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 OLFM2O95897 454 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 HADHBP55084 474 aaKnown RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 PHC1P78364 1004 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 KRT76Q01546 638 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 APBA1Q02410 837 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CENPCQ03188 943 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 SH3D19Q5HYK7 790 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 SLC27A3Q5K4L6 730 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 WDR93Q6P2C0 686 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 AAGABQ6PD74 315 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 NUP93Q8N1F7 819 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 C8orf58Q8NAV2 365 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 EMID1Q96A84 441 aaPredicted RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 LENG1Q96BZ8 264 aaPredicted RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 GOLPH3LQ9H4A5 285 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 DDX28Q9NUL7 540 aaKnown RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 TMOD2Q9NZR1 351 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CYB5R1Q9UHQ9 305 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 TRAV20A0A0B4J274 112 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 MAGEB16A2A368 324 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 NCF1BA6NI72 391 aaPredicted RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 NCF1CA8MVU1 366 aaPredicted RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 SCAMP3O14828 347 aaKnown RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CHN1P15882 459 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CTNNB1P35222 781 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CLCN4P51793 760 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 ARFIP1P53367 373 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CASP9P55211 416 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 NLRP11P59045 1033 aaKnown RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 PLCB3Q01970 1234 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 FAM189A2Q15884 450 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CDONQ4KMG0 1287 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 DEPDC1Q5TB30 811 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 SYDE2Q5VT97 1194 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CNSTQ6PJW8 725 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 YTHDF3Q7Z739 585 aaKnown RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 ZSCAN1Q8NBB4 408 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CEMIPQ8WUJ3 1361 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 DDX23Q9BUQ8 820 aaKnown RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 MLPHQ9BV36 600 aaPredicted RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 MRPL1Q9BYD6 325 aaKnown RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 PITHD1Q9GZP4 211 aaPredicted RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 VTA1Q9NP79 307 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 BAG5Q9UL15 447 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 PPP2R2CQ9Y2T4 447 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 TACC3Q9Y6A5 838 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 A0A087WZG4 1122 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 ATP6V1G2-DDX39BF2Z307 99 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CCRL2O00421 344 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 FBP2O00757 339 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 KPNA5O15131 536 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CCNA2P20248 432 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 GJC1P36383 396 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms