RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 TWF1Q12792 350 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 TMEM132DQ14C87 1099 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 SLC5A9Q2M3M2 681 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 SLC44A4Q53GD3 710 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 SPECC1Q5M775 1068 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 SPATA1Q5VX52 437 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 ADALQ6DHV7 355 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 ST13P5Q8NFI4 369 aaPredicted RBP14.24□□□□□ -0.13
RTN3-212ENST00000543123 MCRS1Q96EZ8 462 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 INTS4Q96HW7 963 aaKnown RBP14.24□□□□□ -0.13
RTN3-212ENST00000543123 RPP25Q9BUL9 199 aaKnown RBP14.24□□□□□ -0.13
RTN3-212ENST00000543123 BCO2Q9BYV7 579 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 OSBPL6Q9BZF3 934 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 ASB7Q9H672 318 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 CPSF3Q9UKF6 684 aaKnown RBP14.24□□□□□ -0.13
RTN3-212ENST00000543123 EXOC7Q9UPT5 735 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 C2CD2Q9Y426 696 aa14.24□□□□□ -0.13
RTN3-212ENST00000543123 SRPRBQ9Y5M8 271 aaKnown RBP14.24□□□□□ -0.13
RTN3-212ENST00000543123 SEC24AO95486 1093 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 DCNP07585 359 aaKnown RBP14.23□□□□□ -0.13
RTN3-212ENST00000543123 EPHB3P54753 998 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 C1QBPQ07021 282 aaKnown RBP14.23□□□□□ -0.13
RTN3-212ENST00000543123 SNW1Q13573 536 aaKnown RBP14.23□□□□□ -0.13
RTN3-212ENST00000543123 MYBPC2Q14324 1141 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 POSTNQ15063 836 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 PRSS36Q5K4E3 855 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 RRAGBQ5VZM2 374 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 OVOS1Q6IE37 1185 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 JADE1Q6IE81 842 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 ARMCX5Q6P1M9 558 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 CCDC73Q6ZRK6 1079 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 SV2BQ7L1I2 683 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 ASCL5Q7RTU5 278 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 LRRC15Q8TF66 581 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 DNASE1L2Q92874 299 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 EPSTI1Q96J88 318 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 NELL2Q99435 816 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 GPR88Q9GZN0 384 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 ZFP14Q9HCL3 533 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 AGO2Q9UKV8 859 aaKnown RBP14.23□□□□□ -0.13
RTN3-212ENST00000543123 DSEQ9UL01 958 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 MRPS17Q9Y2R5 130 aaKnown RBP14.23□□□□□ -0.13
RTN3-212ENST00000543123 CLIC4Q9Y696 253 aa14.23□□□□□ -0.13
RTN3-212ENST00000543123 RIF1Q5UIP0 2472 aaKnown RBP14.22□□□□□ -0.13
RTN3-212ENST00000543123 WDR87Q6ZQQ6 2873 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 NCAM2O15394 837 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 FGF19O95750 216 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 SYT1P21579 422 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 NMT1P30419 496 aaKnown RBP14.22□□□□□ -0.13
RTN3-212ENST00000543123 ALDH1A3P47895 512 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 EPHA5P54756 1037 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 LILRA4P59901 499 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 GPR17Q13304 367 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 ALCAMQ13740 583 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 UBXN2BQ14CS0 331 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 PTPAQ15257 358 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 ZBTB41Q5SVQ8 909 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 RNF19BQ6ZMZ0 732 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 C1orf210Q8IVY1 113 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 SMARCD2Q92925 531 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 E2F7Q96AV8 911 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 FIZ1Q96SL8 496 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 DDX23Q9BUQ8 820 aaKnown RBP14.22□□□□□ -0.13
RTN3-212ENST00000543123 FOXQ1Q9C009 403 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 ZSCAN16Q9H4T2 348 aaPredicted RBP14.22□□□□□ -0.13
RTN3-212ENST00000543123 MRPL44Q9H9J2 332 aaKnown RBP14.22□□□□□ -0.13
RTN3-212ENST00000543123 HSFX1Q9UBD0 423 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 FBXO2Q9UK22 296 aaPredicted RBP14.22□□□□□ -0.13
RTN3-212ENST00000543123 YIPF1Q9Y548 306 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 ASB3Q9Y575 518 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 TIMM13Q9Y5L4 95 aaPredicted RBP14.22□□□□□ -0.13
RTN3-212ENST00000543123 MORC2Q9Y6X9 1032 aaPredicted RBP14.22□□□□□ -0.13
RTN3-212ENST00000543123 NOTCH4Q99466 2003 aa14.22□□□□□ -0.13
RTN3-212ENST00000543123 IL18RAPO95256 599 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 NFICP08651 508 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 MYL4P12829 197 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 ACOT2P49753 483 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 RESTQ13127 1097 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 ZC2HC1CQ53FD0 456 aaPredicted RBP14.21□□□□□ -0.13
RTN3-212ENST00000543123 FAM78AQ5JUQ0 283 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 C9orf57Q5W0N0 161 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 SLC39A4Q6P5W5 647 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 ZNF852Q6ZMS4 543 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 TPRG1Q6ZUI0 275 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 DYMQ7RTS9 669 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 ZNF720Q7Z2F6 126 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 METTL23Q86XA0 190 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 SFR1Q86XK3 245 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 NT5DC4Q86YG4 428 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 DEPDC1BQ8WUY9 529 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 POMGNT1Q8WZA1 660 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 SENP8Q96LD8 212 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 ASB16Q96NS5 453 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 TRMT61BQ9BVS5 477 aaKnown RBP14.21□□□□□ -0.13
RTN3-212ENST00000543123 SLITRK6Q9H5Y7 841 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 BRD9Q9H8M2 597 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 DLGAP2Q9P1A6 1054 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 STYXL1Q9Y6J8 313 aa14.21□□□□□ -0.13
RTN3-212ENST00000543123 PTPRZ1P23471 2315 aaPredicted RBP14.21□□□□□ -0.13
RTN3-212ENST00000543123 MIA3Q5JRA6 1907 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms