RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NIPA2Q8N8Q9 360 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 TLCD1Q96CP7 247 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 DDX27Q96GQ7 796 aaKnown RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 RBM41Q96IZ5 413 aaKnown RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 FRMD8P1Q9BZ68 369 aaPredicted RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 CELF4Q9BZC1 486 aaKnown RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 ROPN1BQ9BZX4 212 aaPredicted RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 VRTNQ9H8Y1 702 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 ROPN1Q9HAT0 212 aaPredicted RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 PRMT7Q9NVM4 692 aaPredicted RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 STRIP2Q9ULQ0 834 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 NR2E1Q9Y466 385 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 UMODL1Q5DID0 1318 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 EVPLQ92817 2033 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 TMEM110-MUSTN1A8MSY1 372 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 ZBTB42B2RXF5 422 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 NOP56O00567 594 aaKnown RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 STAU1O95793 577 aaKnown RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 KRT14P02533 472 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 MMP8P22894 467 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 MDH1P40925 334 aaKnown RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 PMS2P54278 862 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 GNGT1P63211 74 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 ADCY2Q08462 1091 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 BYSLQ13895 437 aaKnown RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 DNAJC21Q5F1R6 531 aaKnown RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 B4GALNT4Q76KP1 1039 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 DDX42Q86XP3 938 aaKnown RBP eCLIP10.5□□□□□ -0.73
SS18-205ENST00000542420 RELL1Q8IUW5 271 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 GPATCH11Q8N954 259 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 UBLCP1Q8WVY7 318 aaPredicted RBP10.5□□□□□ -0.73
SS18-205ENST00000542420 TRIM51Q9BSJ1 452 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 PI4K2AQ9BTU6 479 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 VTA1Q9NP79 307 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 ADAM22Q9P0K1 906 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 RBPJLQ9UBG7 517 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 PTPRJQ12913 1337 aa10.5□□□□□ -0.73
SS18-205ENST00000542420 CCDC189A1A4V9 331 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 GAS8O95995 478 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 TNNC2P02585 160 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 RARAP10276 462 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 RRM1P23921 792 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 ATICP31939 592 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 MARCKSL1P49006 195 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 CCNA1P78396 465 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 FSTL1Q12841 308 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 CALCOCO2Q13137 446 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 LAMC2Q13753 1193 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 CCNG2Q16589 344 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 NAA35Q5VZE5 725 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 TMEM35BQ8NCS4 154 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 FEZF2Q8TBJ5 459 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 CDCA5Q96FF9 252 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 ANKRD36BP1Q96IX9 119 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 EPN3Q9H201 632 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 LHX5Q9H2C1 402 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 DPH5Q9H2P9 285 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 ANKFY1Q9P2R3 1169 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 EFR3BQ9Y2G0 817 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 NUB1Q9Y5A7 615 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 CITO14578 2027 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 PDCD11Q14690 1871 aaKnown RBP10.49□□□□□ -0.73
SS18-205ENST00000542420 MED7O43513 233 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 MCF2P10911 925 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 KLF1Q13351 362 aaPredicted RBP10.49□□□□□ -0.73
SS18-205ENST00000542420 MAMLD1Q13495 774 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 SGO2Q562F6 1265 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 C6orf118Q5T5N4 469 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 DENND2CQ68D51 928 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 TTC27Q6P3X3 843 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 FOXR1Q6PIV2 292 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 TMEM270Q6UE05 265 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 EGFL6Q8IUX8 553 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 CCDC105Q8IYK2 499 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 RCOR2Q8IZ40 523 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 LINC01465Q8N7H1 131 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 ATL2Q8NHH9 583 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 FNIP1Q8TF40 1166 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 GLG1Q92896 1179 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 C18orf8Q96DM3 657 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 CYFIP2Q96F07 1278 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 ZBTB45Q96K62 511 aaPredicted RBP10.49□□□□□ -0.73
SS18-205ENST00000542420 HINFPQ9BQA5 517 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 ELP3Q9H9T3 547 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 DDX56Q9NY93 547 aaKnown RBP10.49□□□□□ -0.73
SS18-205ENST00000542420 ERAP1Q9NZ08 941 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 WDR35Q9P2L0 1181 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 FZD1Q9UP38 647 aa10.49□□□□□ -0.73
SS18-205ENST00000542420 TCRBV5S1A1TA0A578 114 aa10.48□□□□□ -0.73
SS18-205ENST00000542420 ATMINO43313 823 aaPredicted RBP10.48□□□□□ -0.73
SS18-205ENST00000542420 SORBS3O60504 671 aa10.48□□□□□ -0.73
SS18-205ENST00000542420 AGTP01019 485 aa10.48□□□□□ -0.73
SS18-205ENST00000542420 EDN1P05305 212 aa10.48□□□□□ -0.73
SS18-205ENST00000542420 HOXC6P09630 235 aa10.48□□□□□ -0.73
SS18-205ENST00000542420 WEE2P0C1S8 567 aa10.48□□□□□ -0.73
SS18-205ENST00000542420 POLR2BP30876 1174 aaKnown RBP10.48□□□□□ -0.73
SS18-205ENST00000542420 PHKA2P46019 1235 aa10.48□□□□□ -0.73
SS18-205ENST00000542420 RPL21P46778 160 aaKnown RBP10.48□□□□□ -0.73
SS18-205ENST00000542420 WNT7BP56706 349 aa10.48□□□□□ -0.73
SS18-205ENST00000542420 PPP2R2AP63151 447 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms