RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 RTP3Q9BQQ7 232 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 C11orf84Q9BUA3 381 aaPredicted RBP14.01□□□□□ -0.17
CCDC42-202ENST00000539522 HERC2P3Q9BVR0 1158 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 COLEC11Q9BWP8 271 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 APOBEC3GQ9HC16 384 aaKnown RBP14.01□□□□□ -0.17
CCDC42-202ENST00000539522 ARMCX3Q9UH62 379 aaPredicted RBP14.01□□□□□ -0.17
CCDC42-202ENST00000539522 ITGA11Q9UKX5 1188 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 MTCH2Q9Y6C9 303 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 TULP1O00294 542 aaPredicted RBP14□□□□□ -0.17
CCDC42-202ENST00000539522 ADAM12O43184 909 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 HCRTO43612 131 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 TBC1D4O60343 1298 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 TADA2AO75478 443 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 SOD2P04179 222 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 ATP1A3P13637 1013 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 MYL5Q02045 173 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 MRPL58Q14197 206 aaKnown RBP14□□□□□ -0.17
CCDC42-202ENST00000539522 DCAF17Q5H9S7 520 aaPredicted RBP14□□□□□ -0.17
CCDC42-202ENST00000539522 SPOPLQ6IQ16 392 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 VPS52Q8N1B4 723 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 DEFB123Q8N688 67 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 LRRC52Q8N7C0 313 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 LNX1Q8TBB1 728 aaPredicted RBP14□□□□□ -0.17
CCDC42-202ENST00000539522 MYLIPQ8WY64 445 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 TMEM169Q96HH4 297 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 ANKRD36BP1Q96IX9 119 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 PI4K2AQ9BTU6 479 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 SDCBP2Q9H190 292 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 MMRN2Q9H8L6 949 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 TMEM8AQ9HCN3 771 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 COQ4Q9Y3A0 265 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 PRRC2BQ5JSZ5 2229 aaKnown RBP14□□□□□ -0.17
CCDC42-202ENST00000539522 MYO9BQ13459 2157 aa14□□□□□ -0.17
CCDC42-202ENST00000539522 XPOTO43592 962 aaKnown RBP13.99□□□□□ -0.17
CCDC42-202ENST00000539522 STAU1O95793 577 aaKnown RBP13.99□□□□□ -0.17
CCDC42-202ENST00000539522 HLA-DRAP01903 254 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 TNNC2P02585 160 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 CTSAP10619 480 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 KRT13P13646 458 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 GTF2H1P32780 548 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 GTF2F1P35269 517 aaKnown RBP eCLIP13.99□□□□□ -0.17
CCDC42-202ENST00000539522 FMO5P49326 533 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 RBP5P82980 135 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 DSG1Q02413 1049 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 UBE3AQ05086 875 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 KCNH2Q12809 1159 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 PTPN14Q15678 1187 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 CCDC40Q4G0X9 1142 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 TCP11X2Q5H9J9 407 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 FAM171A1Q5VUB5 890 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 PRSS55Q6UWB4 352 aaPredicted RBP13.99□□□□□ -0.17
CCDC42-202ENST00000539522 OSTM1Q86WC4 334 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 FEZF2Q8TBJ5 459 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 CACTINQ8WUQ7 758 aaKnown RBP13.99□□□□□ -0.17
CCDC42-202ENST00000539522 KBTBD7Q8WVZ9 684 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 SENP8Q96LD8 212 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 VRTNQ9H8Y1 702 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 METTL14Q9HCE5 456 aaKnown RBP13.99□□□□□ -0.17
CCDC42-202ENST00000539522 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.99□□□□□ -0.17
CCDC42-202ENST00000539522 TLR9Q9NR96 1032 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 GDAP2Q9NXN4 497 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 POLIQ9UNA4 740 aa13.99□□□□□ -0.17
CCDC42-202ENST00000539522 TIMM13Q9Y5L4 95 aaPredicted RBP13.99□□□□□ -0.17
CCDC42-202ENST00000539522 SF3B1O75533 1304 aaKnown RBP eCLIP13.98□□□□□ -0.17
CCDC42-202ENST00000539522 C2orf71A6NGG8 1288 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 KPNA7A9QM74 516 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 KCNJ18B7U540 433 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 PMM2O15305 246 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 GNA14O95837 355 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 ASS1P00966 412 aaKnown RBP13.98□□□□□ -0.17
CCDC42-202ENST00000539522 KRT19P08727 400 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 TAF6P49848 677 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 RBM10P98175 930 aaKnown RBP13.98□□□□□ -0.17
CCDC42-202ENST00000539522 APBA1Q02410 837 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 NCOA4Q13772 614 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 KCNJ12Q14500 433 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 KRT31Q15323 416 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 SOWAHAQ2M3V2 549 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 PLPP4Q5VZY2 271 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 KRT39Q6A163 491 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 VN1R2Q8NFZ6 395 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 MRPL38Q96DV4 380 aaKnown RBP13.98□□□□□ -0.17
CCDC42-202ENST00000539522 HPDLQ96IR7 371 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 TCF25Q9BQ70 676 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 PCDHB8Q9UN66 801 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 L1RE1Q9UN81 338 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 NUB1Q9Y5A7 615 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 IRAK3Q9Y616 596 aa13.98□□□□□ -0.17
CCDC42-202ENST00000539522 VNN2O95498 520 aa13.97□□□□□ -0.17
CCDC42-202ENST00000539522 CYP11A1P05108 521 aa13.97□□□□□ -0.17
CCDC42-202ENST00000539522 RPL17P18621 184 aaKnown RBP13.97□□□□□ -0.17
CCDC42-202ENST00000539522 MXI1P50539 228 aa13.97□□□□□ -0.17
CCDC42-202ENST00000539522 AP3M2P53677 418 aa13.97□□□□□ -0.17
CCDC42-202ENST00000539522 KCNC3Q14003 757 aa13.97□□□□□ -0.17
CCDC42-202ENST00000539522 CCDC142Q17RM4 750 aa13.97□□□□□ -0.17
CCDC42-202ENST00000539522 VARS2Q5ST30 1063 aaKnown RBP13.97□□□□□ -0.17
CCDC42-202ENST00000539522 TCERG1LQ5VWI1 586 aa13.97□□□□□ -0.17
CCDC42-202ENST00000539522 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.97□□□□□ -0.17
CCDC42-202ENST00000539522 PDCL2Q8N4E4 241 aa13.97□□□□□ -0.17
CCDC42-202ENST00000539522 MRPL43Q8N983 215 aaKnown RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms