RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PLA2G4FQ68DD2 849 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 CC2D1AQ6P1N0 951 aaPredicted RBP10.12□□□□□ -0.79
USP28-205ENST00000537706 OTUD6AQ7L8S5 288 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 RASSF3Q86WH2 238 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 REXO1Q8N1G1 1221 aaKnown RBP10.12□□□□□ -0.79
USP28-205ENST00000537706 CRYGNQ8WXF5 182 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 BAP1Q92560 729 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 GKN1Q9NS71 199 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 POLR3BQ9NW08 1133 aaPredicted RBP10.12□□□□□ -0.79
USP28-205ENST00000537706 DAXXQ9UER7 740 aaPredicted RBP10.12□□□□□ -0.79
USP28-205ENST00000537706 ZMYM5Q9UJ78 669 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 ATXN2Q99700 1313 aaKnown RBP10.11□□□□□ -0.79
USP28-205ENST00000537706 ERVH48-1M5A8F1 160 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 SYN3O14994 580 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 MSH4O15457 936 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 AP5Z1O43299 807 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 STBD1O95210 358 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 WEE1P30291 646 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 GALK1P51570 392 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 CACNB1Q02641 598 aaPredicted RBP10.11□□□□□ -0.79
USP28-205ENST00000537706 EMC2Q15006 297 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 CTXN3Q4LDR2 81 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 PEAR1Q5VY43 1037 aaPredicted RBP10.11□□□□□ -0.79
USP28-205ENST00000537706 ZNF280DQ6N043 979 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 ANO5Q75V66 913 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 GLRX5Q86SX6 157 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 GPIHBP1Q8IV16 184 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 FAM181AQ8N9Y4 354 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 EXOC6Q8TAG9 804 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 WHAMMQ8TF30 809 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 SLC5A5Q92911 643 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 CD101Q93033 1021 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 CCDC136Q96JN2 1154 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 TBC1D32Q96NH3 1257 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 MTRQ99707 1265 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 ADPGKQ9BRR6 497 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 DHX33Q9H6R0 707 aaKnown RBP10.11□□□□□ -0.79
USP28-205ENST00000537706 PILRBQ9UKJ0 227 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 ASB3Q9Y575 518 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 TDRD15B5MCY1 1934 aaKnown RBP10.11□□□□□ -0.79
USP28-205ENST00000537706 PDCD11Q14690 1871 aaKnown RBP10.11□□□□□ -0.79
USP28-205ENST00000537706 PRC1O43663 620 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 CYP21A2P08686 494 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 CPB1P15086 417 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 GNA11P29992 359 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 ALDH1A3P47895 512 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 ANTXR2P58335 489 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 PPP4R3AQ6IN85 833 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 TYW1BQ6NUM6 668 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 ITIH5Q86UX2 942 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 IFNLR1Q8IU57 520 aaPredicted RBP10.11□□□□□ -0.79
USP28-205ENST00000537706 CPA6Q8N4T0 437 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 BICD2Q8TD16 824 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 WBP1Q96G27 269 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 CAMK1GQ96NX5 476 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 TASP1Q9H6P5 420 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 TMEM74BQ9NUR3 256 aa10.11□□□□□ -0.79
USP28-205ENST00000537706 BCCIPQ9P287 314 aaKnown RBP eCLIP10.11□□□□□ -0.79
USP28-205ENST00000537706 A0A1B0GUA9 196 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 PTGESO14684 152 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 N4BP3O15049 544 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 HLA-EP13747 358 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 MCM5P33992 734 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 PDGFRLQ15198 375 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 SLC36A4Q6YBV0 504 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 MB21D2Q8IYB1 491 aaPredicted RBP10.1□□□□□ -0.79
USP28-205ENST00000537706 NXPE2Q96DL1 559 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 CDC6Q99741 560 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 FBXL5Q9UKA1 691 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 YIPF1Q9Y548 306 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 V9GY48 417 aaPredicted RBP10.1□□□□□ -0.79
USP28-205ENST00000537706 CNTNAP5Q8WYK1 1306 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 IGSF10Q6WRI0 2623 aa10.1□□□□□ -0.79
USP28-205ENST00000537706 B8ZZF3 427 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 SH2B2O14492 632 aaPredicted RBP10.09□□□□□ -0.79
USP28-205ENST00000537706 P2RY2P41231 377 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 LIFRP42702 1097 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 PTGER3P43115 390 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 QARSP47897 775 aaKnown RBP10.09□□□□□ -0.79
USP28-205ENST00000537706 CSRP3P50461 194 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 NPEPPSP55786 919 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 MBTD1Q05BQ5 628 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 NR1H3Q13133 447 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 APBB1IPQ7Z5R6 666 aaPredicted RBP10.09□□□□□ -0.79
USP28-205ENST00000537706 MICU3Q86XE3 530 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 APPL2Q8NEU8 664 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 ENGASEQ8NFI3 743 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 RUFY2Q8WXA3 655 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 KIF9Q9HAQ2 790 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 CAPN10Q9HC96 672 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 BMP2KQ9NSY1 1161 aaPredicted RBP10.09□□□□□ -0.79
USP28-205ENST00000537706 SUSD2Q9UGT4 822 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 ESYT2A0FGR8 921 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 TBX3O15119 743 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 SLC28A2O43868 658 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 RECQL4O94761 1208 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 ITPKAP23677 461 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 ITPKBP27987 946 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 CDC25CP30307 473 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 BRCC3P46736 316 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms