RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 USP50Q70EL3 339 aaPredicted RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 NLRX1Q86UT6 975 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 RASSF3Q86WH2 238 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 AGGF1Q8N302 714 aaeCLIP3.94□□□□□ -1.78
MCF2-210ENST00000536274 PPM1KQ8N3J5 372 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 C1orf131Q8NDD1 294 aaKnown RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 PSD4Q8NDX1 1056 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 STMN2Q93045 179 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 OSBP2Q969R2 916 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 MASTLQ96GX5 879 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 MPHOSPH6Q99547 160 aaKnown RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 NOC4LQ9BVI4 516 aaKnown RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 PLEKHA5Q9HAU0 1116 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 TRPV5Q9NQA5 729 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 TXLNGQ9NUQ3 528 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 BCS1LQ9Y276 419 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 MAP3K2Q9Y2U5 619 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 EMSYQ7Z589 1322 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 RPTORQ8N122 1335 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 A0A087X0T9 212 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 ANKRD34BA5PLL1 514 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 B4E1Z4 1266 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 FZD9O00144 591 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 RASGRF2O14827 1237 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 WDR46O15213 610 aaKnown RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 GSC2O15499 205 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 BUD23O43709 281 aaKnown RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 CYTH3O43739 400 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 FAM228BP0C875 321 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 SMIM18P0DKX4 95 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 SRGNP10124 158 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 FCER1AP12319 257 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 BRAFP15056 766 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 ANPEPP15144 967 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 NPR1P16066 1061 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 PRLRP16471 622 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 PON1P27169 355 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 ARL1P40616 181 aaPredicted RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 CLK3P49761 638 aaKnown RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 CACNB3P54284 484 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 CABP4P57796 275 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 PTK2Q05397 1052 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 IFIT5Q13325 482 aaKnown RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 TCIRG1Q13488 830 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 RAPGEF1Q13905 1077 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 BCL2A1Q16548 175 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 CYP2A13Q16696 494 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 WASHC4Q2M389 1173 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 PARP6Q2NL67 630 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 KIAA1755Q5JYT7 1200 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 MEI1Q5TIA1 1274 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 Q6ZNX1 250 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 AMIGO3Q86WK7 504 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 APLFQ8IW19 511 aaPredicted RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 ZBED8Q8IZ13 594 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 CSGALNACT2Q8N6G5 542 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 SAMD3Q8N6K7 520 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 RFWD2Q8NHY2 731 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 HELQQ8TDG4 1101 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 STARD8Q92502 1023 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 PPP2R3CQ969Q6 453 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 CNOT6LQ96LI5 555 aaKnown RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 FERD3LQ96RJ6 166 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 UCN2Q96RP3 112 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 SH3GL1Q99961 368 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 UBA5Q9GZZ9 404 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 ANLNQ9NQW6 1124 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 NPDC1Q9NQX5 325 aaPredicted RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 RWDD2AQ9UIY3 292 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 ASAP1Q9ULH1 1129 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 SYNPO2Q9UMS6 1093 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 TRAF3IP3Q9Y228 551 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 ZNF652Q9Y2D9 606 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 GIT1Q9Y2X7 761 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 HBS1LQ9Y450 684 aaKnown RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 PCDHB3Q9Y5E6 796 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 FADS3Q9Y5Q0 445 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 GPC6Q9Y625 555 aaPredicted RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 MAST3O60307 1309 aa3.94□□□□□ -1.78
MCF2-210ENST00000536274 BAZ2BQ9UIF8 2168 aaKnown RBP3.94□□□□□ -1.78
MCF2-210ENST00000536274 AKAP11Q9UKA4 1901 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 MEI4A8MW99 385 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 GYG2O15488 501 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 PRKAB2O43741 272 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 STARD3NLO95772 234 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 APOEP02649 317 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 FGAP02671 866 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 RPN1P04843 607 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 ENO2P09104 434 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 ZNF16P17020 682 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 PEX2P28328 305 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 KCNJ1P48048 391 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 SLC5A3P53794 718 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 VCPP55072 806 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 WASHC5Q12768 1159 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 TRIM14Q14142 442 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 NR1D2Q14995 579 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 RPS6KA1Q15418 735 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 KCNJ8Q15842 424 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 TMEM259Q4ZIN3 620 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms