RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 DTNBO60941 627 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 SNUPNO95149 360 aaKnown RBP4.55□□□□□ -1.68
USP48-215ENST00000534705 ZRANB2O95218 330 aaKnown RBP eCLIP4.55□□□□□ -1.68
USP48-215ENST00000534705 CCND1P24385 295 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 EDNRBP24530 442 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 BMPR1AP36894 532 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 CHN2P52757 468 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 RNASE9P60153 205 aaKnown RBP4.55□□□□□ -1.68
USP48-215ENST00000534705 IGBP1P78318 339 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 KIF23Q02241 960 aaPredicted RBP4.55□□□□□ -1.68
USP48-215ENST00000534705 TARDBPQ13148 414 aaKnown RBP eCLIP4.55□□□□□ -1.68
USP48-215ENST00000534705 BEAN1Q3B7T3 259 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 ZBTB46Q86UZ6 589 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 RHOT1Q8IXI2 618 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 CMTR2Q8IYT2 770 aaKnown RBP4.55□□□□□ -1.68
USP48-215ENST00000534705 ZGPATQ8N5A5 531 aaKnown RBP4.55□□□□□ -1.68
USP48-215ENST00000534705 IFI44Q8TCB0 444 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 CCHCR1Q8TD31 782 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 NSUN6Q8TEA1 469 aaKnown RBP4.55□□□□□ -1.68
USP48-215ENST00000534705 DPF2Q92785 391 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 COQ10AQ96MF6 247 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 NEU1Q99519 415 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 NUP88Q99567 741 aaPredicted RBP4.55□□□□□ -1.68
USP48-215ENST00000534705 DDX56Q9NY93 547 aaKnown RBP4.55□□□□□ -1.68
USP48-215ENST00000534705 TRPM5Q9NZQ8 1165 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 DKK2Q9UBU2 259 aa4.55□□□□□ -1.68
USP48-215ENST00000534705 PREX2Q70Z35 1606 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 CFAP74Q9C0B2 1584 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 CENPVL1A0A0U1RR11 272 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 CCDC154A6NI56 674 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 HLA-DOAP06340 250 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 PDGFRBP09619 1106 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 VCAM1P19320 739 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 GCSHP23434 173 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 ZFP36P26651 326 aaKnown RBP4.54□□□□□ -1.68
USP48-215ENST00000534705 RGS19P49795 217 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 FXR1P51114 621 aaKnown RBP eCLIP4.54□□□□□ -1.68
USP48-215ENST00000534705 RAP2BP61225 183 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 ODF1Q14990 250 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 C3orf36Q3SXR2 165 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 PDCD4Q53EL6 469 aaKnown RBP4.54□□□□□ -1.68
USP48-215ENST00000534705 PRR16Q569H4 304 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 ZNF529Q6P280 563 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 FBXO18Q8NFZ0 1043 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 NLGN4YQ8NFZ3 816 aaPredicted RBP4.54□□□□□ -1.68
USP48-215ENST00000534705 C11orf54Q9H0W9 315 aaPredicted RBP4.54□□□□□ -1.68
USP48-215ENST00000534705 RNPEPQ9H4A4 650 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 SERHL2Q9H4I8 314 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 AKIP1Q9NQ31 210 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 SERPINB13Q9UIV8 391 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 LIMCH1Q9UPQ0 1083 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 FPGT-TNNI3KV9GXZ4 949 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 ITSN2Q9NZM3 1697 aa4.54□□□□□ -1.68
USP48-215ENST00000534705 E2F8A0AVK6 867 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 HAUS5O94927 633 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 CFIP05156 583 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 FAM189BP81408 668 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 MXRA7P84157 204 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 TLE1Q04724 770 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 UBXN2BQ14CS0 331 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 UAP1L1Q3KQV9 507 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 PABPC1LQ4VXU2 614 aaKnown RBP4.53□□□□□ -1.68
USP48-215ENST00000534705 TTC7BQ86TV6 843 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 RSPH3Q86UC2 560 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 ARHGEF19Q8IW93 802 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 MIER2Q8N344 545 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 CPA6Q8N4T0 437 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 DCBLD1Q8N8Z6 715 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 OR56A1Q8NGH5 318 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 STAG1Q8WVM7 1258 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 STON2Q8WXE9 905 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 TMX3Q96JJ7 454 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 MRGPRX4Q96LA9 322 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 CAMKK2Q96RR4 588 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 SPATA5L1Q9BVQ7 753 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 ZNF768Q9H5H4 540 aaKnown RBP4.53□□□□□ -1.68
USP48-215ENST00000534705 KLHL11Q9NVR0 708 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 FBXO34Q9NWN3 711 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 ATP11BQ9Y2G3 1177 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 USP15Q9Y4E8 981 aaPredicted RBP4.53□□□□□ -1.68
USP48-215ENST00000534705 TEX14Q8IWB6 1497 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 FMN1Q68DA7 1419 aa4.53□□□□□ -1.68
USP48-215ENST00000534705 COL11A2P13942 1736 aaPredicted RBP4.52□□□□□ -1.69
USP48-215ENST00000534705 ARAP3Q8WWN8 1544 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 FYCO1Q9BQS8 1478 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 ZNF185O15231 689 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 SLC16A6O15403 523 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 NCR1O76036 304 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 ARIH2O95376 493 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 MTHFD1P11586 935 aaKnown RBP4.52□□□□□ -1.69
USP48-215ENST00000534705 AKAP5P24588 427 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 BLOC1S1P78537 153 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 CREMQ03060 361 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 THEMIS2Q5TEJ8 643 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 MED25Q71SY5 747 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 FITM2Q8N6M3 262 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 IL17RDQ8NFM7 739 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 NUP133Q8WUM0 1156 aa4.52□□□□□ -1.69
USP48-215ENST00000534705 SMG7Q92540 1137 aaKnown RBP4.52□□□□□ -1.69
USP48-215ENST00000534705 CAVIN3Q969G5 261 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms