RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 CNTN3Q9P232 1028 aa12.62□□□□□ -0.39
CMTM1-216ENST00000533078 NOL7Q9UMY1 257 aaKnown RBP12.62□□□□□ -0.39
CMTM1-216ENST00000533078 PCDHB8Q9UN66 801 aa12.62□□□□□ -0.39
CMTM1-216ENST00000533078 KIAA1024Q9UPX6 916 aa12.62□□□□□ -0.39
CMTM1-216ENST00000533078 CHD8Q9HCK8 2581 aa12.62□□□□□ -0.39
CMTM1-216ENST00000533078 SLC38A8A6NNN8 435 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 CHURC1-FNTBB4DL54 471 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 WNT7AO00755 349 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 XPOTO43592 962 aaKnown RBP12.61□□□□□ -0.39
CMTM1-216ENST00000533078 EIF5BO60841 1220 aaKnown RBP12.61□□□□□ -0.39
CMTM1-216ENST00000533078 IGFBP6P24592 240 aaPredicted RBP12.61□□□□□ -0.39
CMTM1-216ENST00000533078 NPTX2P47972 431 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 FNTBP49356 437 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 SMTNP53814 917 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 EPHA5P54756 1037 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 NOLC1Q14978 699 aaKnown RBP eCLIP12.61□□□□□ -0.39
CMTM1-216ENST00000533078 PTPAQ15257 358 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 TEAD2Q15562 447 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 ZNF174Q15697 407 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 ME3Q16798 604 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 ARHGAP15Q53QZ3 475 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 HEATR6Q6AI08 1181 aaKnown RBP12.61□□□□□ -0.39
CMTM1-216ENST00000533078 RALGPS2Q86X27 583 aaPredicted RBP12.61□□□□□ -0.39
CMTM1-216ENST00000533078 HS6ST3Q8IZP7 471 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 SNX29Q8TEQ0 813 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 DDX12PQ92771 950 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 C8orf76Q96K31 380 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 ZSWIM3Q96MP5 696 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 GCNAQ96QF7 691 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 TARS2Q9BW92 718 aaKnown RBP12.61□□□□□ -0.39
CMTM1-216ENST00000533078 C17orf75Q9HAS0 396 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 DDX19AQ9NUU7 478 aaKnown RBP12.61□□□□□ -0.39
CMTM1-216ENST00000533078 ANKFY1Q9P2R3 1169 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 YIPF1Q9Y548 306 aa12.61□□□□□ -0.39
CMTM1-216ENST00000533078 MAP1BP46821 2468 aaKnown RBP12.6□□□□□ -0.39
CMTM1-216ENST00000533078 A0A1W2PRU2 124 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 OR6C75A6NL08 312 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 SHISA7A6NL88 538 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 PAPSS2O95340 614 aaPredicted RBP12.6□□□□□ -0.39
CMTM1-216ENST00000533078 GJA1P17302 382 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 TRAPPC10P48553 1259 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 FXR2P51116 673 aaKnown RBP eCLIP12.6□□□□□ -0.39
CMTM1-216ENST00000533078 PLCB2Q00722 1185 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 GUCY1B3Q02153 619 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 ARHGAP29Q52LW3 1261 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 TTC38Q5R3I4 469 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 KRT79Q5XKE5 535 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 ITIH5Q86UX2 942 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 SYNPOQ8N3V7 929 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 SHKBP1Q8TBC3 707 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 C18orf25Q96B23 403 aaPredicted RBP12.6□□□□□ -0.39
CMTM1-216ENST00000533078 ZMAT2Q96NC0 199 aaKnown RBP12.6□□□□□ -0.39
CMTM1-216ENST00000533078 TIPINQ9BVW5 301 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 FOXP1Q9H334 677 aaPredicted RBP12.6□□□□□ -0.39
CMTM1-216ENST00000533078 POLD4Q9HCU8 107 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 PTPRHQ9HD43 1115 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 THG1LQ9NWX6 298 aaKnown RBP12.6□□□□□ -0.39
CMTM1-216ENST00000533078 CEP72Q9P209 647 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 ANGPTL2Q9UKU9 493 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 ASB3Q9Y575 518 aa12.6□□□□□ -0.39
CMTM1-216ENST00000533078 PDCD11Q14690 1871 aaKnown RBP12.59□□□□□ -0.39
CMTM1-216ENST00000533078 SPECC1L-ADORA2AF8WAN1 911 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 CLDN3O15551 220 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 HRO43593 1189 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 JAK2O60674 1132 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 HIP1RO75146 1068 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 TOM1L1O75674 476 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 FCHO2Q0JRZ9 810 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 PDIA5Q14554 519 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 TAF12Q16514 161 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 ARMCX5Q6P1M9 558 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 POTEHQ6S545 545 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 DSTYKQ6XUX3 929 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 RNF19BQ6ZMZ0 732 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 PGLYRP2Q96PD5 576 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 RBM12Q9NTZ6 932 aaKnown RBP12.59□□□□□ -0.39
CMTM1-216ENST00000533078 ARHGAP28Q9P2N2 729 aa12.59□□□□□ -0.39
CMTM1-216ENST00000533078 MYBPHLA2RUH7 354 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 H0YCG3 227 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 MOSPD3O75425 235 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 CCDC192P0DO97 292 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 PROZP22891 400 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 CTHP32929 405 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 AMPD2Q01433 879 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 PPP2R3AQ06190 1150 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 DUSP4Q13115 394 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 VEPH1Q14D04 833 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 KYAT1Q16773 422 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 WDR5BQ86VZ2 330 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 ARID3BQ8IVW6 561 aaPredicted RBP12.58□□□□□ -0.4
CMTM1-216ENST00000533078 FAM160A2Q8N612 972 aaPredicted RBP12.58□□□□□ -0.4
CMTM1-216ENST00000533078 FAM184AQ8NB25 1140 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 EXOC4Q96A65 974 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 BICD1Q96G01 975 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 ATXN3LQ9H3M9 355 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 PLEKHA5Q9HAU0 1116 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 OBP2AQ9NY56 170 aa12.58□□□□□ -0.4
CMTM1-216ENST00000533078 UBQLN1Q9UMX0 589 aaKnown RBP12.58□□□□□ -0.4
CMTM1-216ENST00000533078 CNOT1A5YKK6 2376 aaKnown RBP12.57□□□□□ -0.4
CMTM1-216ENST00000533078 COL4A2P08572 1712 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms