RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 WEE2P0C1S8 567 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 MYBL1P10243 752 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 CD58P19256 250 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 RNASE9P60153 205 aaKnown RBP22.1■■□□□ 1.13
VPS28-209ENST00000528142 MON1BQ7L1V2 547 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 CATSPER4Q7RTX7 472 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 UBE2Q2Q8WVN8 375 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 BCO2Q9BYV7 579 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 VRTNQ9H8Y1 702 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 POLIQ9UNA4 740 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 C17orf102A2RUQ5 167 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 ATP8B1O43520 1251 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 ITGB3P05106 788 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 EIF4BP23588 611 aaKnown RBP22.1■■□□□ 1.13
VPS28-209ENST00000528142 NSFP46459 744 aaKnown RBP22.1■■□□□ 1.13
VPS28-209ENST00000528142 FLT3LGP49771 235 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 GJA9P57773 515 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 TMEM132DQ14C87 1099 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 LONRF2Q1L5Z9 754 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 DCAF12L1Q5VU92 463 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 MFSD14CQ5VZR4 134 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 SLC27A1Q6PCB7 646 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 NT5DC4Q86YG4 428 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 CD302Q8IX05 232 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 HDAC7Q8WUI4 952 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 TRIM11Q96F44 468 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 ZSWIM1Q9BR11 485 aa22.1■■□□□ 1.13
VPS28-209ENST00000528142 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.1■■□□□ 1.134e-7■■■■□ 21.8
VPS28-209ENST00000528142 TTC7AQ9ULT0 858 aaPredicted RBP22.1■■□□□ 1.13
VPS28-209ENST00000528142 KPNA6O60684 536 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 ERLIN1O75477 346 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 NPTXRO95502 500 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 COMTP21964 271 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 MCM3P25205 808 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 ATICP31939 592 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 SP3Q02447 781 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 MESDQ14696 234 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 GLE1Q53GS7 698 aaKnown RBP22.09■■□□□ 1.13
VPS28-209ENST00000528142 ZNF667Q5HYK9 610 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 CCDC70Q6NSX1 233 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 PHF13Q86YI8 300 aaPredicted RBP22.09■■□□□ 1.13
VPS28-209ENST00000528142 TMEM40Q8WWA1 233 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 NXF1Q9UBU9 619 aaKnown RBP22.09■■□□□ 1.13
VPS28-209ENST00000528142 KAT6AQ92794 2004 aa22.09■■□□□ 1.13
VPS28-209ENST00000528142 MIF4GDA9UHW6 222 aaKnown RBP22.08■■□□□ 1.13
VPS28-209ENST00000528142 PGRMC1O00264 195 aaKnown RBP22.08■■□□□ 1.13
VPS28-209ENST00000528142 C6orf222P0C671 652 aaPredicted RBP22.08■■□□□ 1.13
VPS28-209ENST00000528142 RRM1P23921 792 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 YWHAEP62258 255 aaKnown RBP22.08■■□□□ 1.13
VPS28-209ENST00000528142 PRKCZQ05513 592 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 SNX17Q15036 470 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 WDR72Q3MJ13 1102 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 SCARA5Q6ZMJ2 495 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 APBB1IPQ7Z5R6 666 aaPredicted RBP22.08■■□□□ 1.13
VPS28-209ENST00000528142 PASD1Q8IV76 773 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 ALG3Q92685 438 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 CD101Q93033 1021 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 VCPIP1Q96JH7 1222 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 EIF2AQ9BY44 585 aaKnown RBP22.08■■□□□ 1.13
VPS28-209ENST00000528142 UPF3AQ9H1J1 476 aaKnown RBP22.08■■□□□ 1.13
VPS28-209ENST00000528142 CARD9Q9H257 536 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 PLEKHA5Q9HAU0 1116 aa22.08■■□□□ 1.13
VPS28-209ENST00000528142 DMGDHQ9UI17 866 aaKnown RBP22.08■■□□□ 1.13
VPS28-209ENST00000528142 CENPFP49454 3210 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 NKX3-2P78367 333 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 PTP4A2Q12974 167 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 NOTUMQ6P988 496 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 NME8Q8N427 588 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 C7orf31Q8N865 590 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 RUBCNQ92622 972 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 BTBD6Q96KE9 485 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 FUT8Q9BYC5 575 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 SDCBP2Q9H190 292 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 ITGA11Q9UKX5 1188 aa22.08■■□□□ 1.12
VPS28-209ENST00000528142 NOC2LQ9Y3T9 749 aaKnown RBP22.08■■□□□ 1.12
VPS28-209ENST00000528142 HTTP42858 3142 aa22.07■■□□□ 1.12
VPS28-209ENST00000528142 TMEM110-MUSTN1A8MSY1 372 aa22.07■■□□□ 1.12
VPS28-209ENST00000528142 GNAT1P11488 350 aa22.07■■□□□ 1.12
VPS28-209ENST00000528142 AXLP30530 894 aa22.07■■□□□ 1.12
VPS28-209ENST00000528142 SSTR3P32745 418 aaPredicted RBP22.07■■□□□ 1.12
VPS28-209ENST00000528142 ZNF394Q53GI3 561 aa22.07■■□□□ 1.12
VPS28-209ENST00000528142 PPP1R2P3Q6NXS1 205 aa22.07■■□□□ 1.12
VPS28-209ENST00000528142 TFAP2BQ92481 460 aa22.07■■□□□ 1.12
VPS28-209ENST00000528142 L1RE1Q9UN81 338 aa22.07■■□□□ 1.12
VPS28-209ENST00000528142 ZMYND10O75800 440 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 SASH3O75995 380 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 STAU1O95793 577 aaKnown RBP22.06■■□□□ 1.12
VPS28-209ENST00000528142 BRD2P25440 801 aaKnown RBP22.06■■□□□ 1.12
VPS28-209ENST00000528142 POLR2BP30876 1174 aaKnown RBP22.06■■□□□ 1.12
VPS28-209ENST00000528142 PEX5P50542 639 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 GUCY2FP51841 1108 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 TRIM32Q13049 653 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 GNASQ5JWF2 1037 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 C8orf74Q6P047 294 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 CCNI2Q6ZMN8 369 aaPredicted RBP22.06■■□□□ 1.12
VPS28-209ENST00000528142 CD99L2Q8TCZ2 262 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 KRT35Q92764 455 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 MTG1Q9BT17 334 aaPredicted RBP22.06■■□□□ 1.12
VPS28-209ENST00000528142 WNT8AQ9H1J5 351 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 CXCL16Q9H2A7 254 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms