RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 TRIM11Q96F44 468 aa17.31■□□□□ 0.36
SNRNP35-204ENST00000527158 MS4A14Q96JA4 679 aa17.31■□□□□ 0.36
SNRNP35-204ENST00000527158 XYLT2Q9H1B5 865 aa17.31■□□□□ 0.36
SNRNP35-204ENST00000527158 CDHR5Q9HBB8 845 aa17.31■□□□□ 0.36
SNRNP35-204ENST00000527158 CISHQ9NSE2 258 aa17.31■□□□□ 0.36
SNRNP35-204ENST00000527158 THAP12O43422 761 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 NSFP46459 744 aaKnown RBP17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 GJA9P57773 515 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 TMEM132DQ14C87 1099 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 PTPROQ16827 1216 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 PPP1R2P3Q6NXS1 205 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 NT5DC4Q86YG4 428 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 REM2Q8IYK8 340 aaPredicted RBP17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 MMGT1Q8N4V1 131 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 GOLGA6L1Q8N7Z2 621 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 UBR7Q8N806 425 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 C1orf127Q8N9H9 656 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 HES6Q96HZ4 224 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 FAXDC2Q96IV6 333 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 VPS18Q9P253 973 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 UVRAGQ9P2Y5 699 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 MTA2O94776 668 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 NPTXRO95502 500 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 CD58P19256 250 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 AXLP30530 894 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 HOXA11P31270 313 aaPredicted RBP17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 ATICP31939 592 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 ACTN2P35609 894 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 ZNF200P98182 395 aaPredicted RBP17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 ZSCAN26Q16670 478 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 ZNF667Q5HYK9 610 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 C11orf63Q6NUN7 778 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 MTG1Q9BT17 334 aaPredicted RBP17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 NXF1Q9UBU9 619 aaKnown RBP17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 C2CD2Q9Y426 696 aa17.3■□□□□ 0.36
SNRNP35-204ENST00000527158 TOMM70O94826 608 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 CYP1A1P04798 512 aaPredicted RBP17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 ITGB3P05106 788 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 MYBL1P10243 752 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 LMAN1P49257 510 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 ZNF132P52740 706 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 PRKCZQ05513 592 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 CPA5Q8WXQ8 436 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 NUP85Q9BW27 656 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 PLEKHA5Q9HAU0 1116 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 EHD2Q9NZN4 543 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 CNOT8Q9UFF9 292 aaKnown RBP17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 SIX4Q9UIU6 781 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 TULP2O00295 520 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 MEFVO15553 781 aaPredicted RBP17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 ATMINO43313 823 aaPredicted RBP17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 WEE2P0C1S8 567 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 RARBP10826 455 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 ASPAP45381 313 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 CENPCQ03188 943 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 WDR72Q3MJ13 1102 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 NAA35Q5VZE5 725 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 ZNF564Q8TBZ8 553 aaPredicted RBP17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 CYFIP2Q96F07 1278 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 TRIM6Q9C030 488 aaPredicted RBP17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 SMARCAL1Q9NZC9 954 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 ALG6Q9Y672 507 aa17.29■□□□□ 0.36
SNRNP35-204ENST00000527158 MYADML2A6NDP7 307 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 SEPT4O43236 478 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 CEP104O60308 925 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 AOC2O75106 756 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 P4HA1P13674 534 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 HOXC8P31273 242 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 CRYBB1P53674 252 aaPredicted RBP17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 YARSP54577 528 aaKnown RBP17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 SP3Q02447 781 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 SNX17Q15036 470 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 DEFB115Q30KQ5 88 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 TAF2Q6P1X5 1199 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 SCARA5Q6ZMJ2 495 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 MCOLN2Q8IZK6 566 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 ZNF606Q8WXB4 792 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 RNF216Q9NWF9 866 aaPredicted RBP17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 ITGA11Q9UKX5 1188 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 MGAMO43451 1857 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 MESDQ14696 234 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 ACTRT1Q8TDG2 376 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 KIF12Q96FN5 646 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 CAPNS2Q96L46 248 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 RPS6KC1Q96S38 1066 aa17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 UPF3AQ9H1J1 476 aaKnown RBP17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 CHORDC1Q9UHD1 332 aaPredicted RBP17.28■□□□□ 0.36
SNRNP35-204ENST00000527158 PGK1P00558 417 aa17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 RNASE9P60153 205 aaKnown RBP17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 RBP5P82980 135 aa17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 ZNF394Q53GI3 561 aa17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 LIN9Q5TKA1 542 aa17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 PASD1Q8IV76 773 aa17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 VRTNQ9H8Y1 702 aa17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 AVENQ9NQS1 362 aaPredicted RBP17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 DPP3Q9NY33 737 aa17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 AGAP1Q9UPQ3 857 aa17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 DERAQ9Y315 318 aa17.27■□□□□ 0.36
SNRNP35-204ENST00000527158 TMEM110-MUSTN1A8MSY1 372 aa17.26■□□□□ 0.35
SNRNP35-204ENST00000527158 MIF4GDA9UHW6 222 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms