RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 TRAPPC3O43617 180 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 C1QL1O75973 258 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 APBB3O95704 486 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 EGFP01133 1207 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 ENGP17813 658 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 GNA11P29992 359 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 BRCC3P46736 316 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 QARSP47897 775 aaKnown RBP10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 EPHA5P54756 1037 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 MXD4Q14582 209 aaPredicted RBP10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 PTPAQ15257 358 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 TMEM196Q5HYL7 178 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 STXBP5Q5T5C0 1151 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 APOA5Q6Q788 366 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 ZNF605Q86T29 641 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 CCDC12Q8WUD4 166 aaPredicted RBP10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 SLC39A7Q92504 469 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 BRF1Q92994 677 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 CRELD1Q96HD1 420 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 TMX3Q96JJ7 454 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 UBL7Q96S82 380 aaPredicted RBP10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 TPSD1Q9BZJ3 242 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 WRAP73Q9P2S5 460 aaPredicted RBP10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 EBF1Q9UH73 591 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 PPME1Q9Y570 386 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 CACNA1EQ15878 2313 aa10.69□□□□□ -0.7
SMARCB1-206ENST00000477836 CFAP46Q8IYW2 2715 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 TMEM189-UBE2V1I3L0A0 370 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 EML1O00423 815 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 TBX3O15119 743 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 ZBTB43O43298 467 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 DKC1O60832 514 aaKnown RBP eCLIP10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 RECQL4O94761 1208 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 BCKDHBP21953 392 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 USP11P51784 963 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 EXOSC10Q01780 885 aaKnown RBP10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 CACNB1Q02641 598 aaPredicted RBP10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 CAPSQ13938 189 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 TOB2Q14106 344 aaPredicted RBP10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 Q4G0T1 1027 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 USP39Q53GS9 565 aaKnown RBP10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 CD300LGQ6UXG3 332 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 C11orf74Q86VG3 221 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 IFNLR1Q8IU57 520 aaPredicted RBP10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 HDDC3Q8N4P3 179 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 C3orf58Q8NDZ4 430 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 RPLP0P6Q8NHW5 317 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 ZSCAN31Q96LW9 406 aaPredicted RBP10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 AGXT2Q9BYV1 514 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 EVLQ9UI08 416 aaPredicted RBP10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 MBD1Q9UIS9 605 aaPredicted RBP10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 RAI2Q9Y5P3 530 aa10.68□□□□□ -0.7
SMARCB1-206ENST00000477836 SHROOM3Q8TF72 1996 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 GOLGA8AA7E2F4 631 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 GOLGA8BA8MQT2 603 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 UPK3BL1B0FP48 263 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 UPK3BL2E5RIL1 263 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 TDP2O95551 362 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 CDC27P30260 824 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 YWHABP31946 246 aaKnown RBP10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 ATXN3P54252 364 aaPredicted RBP10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 PLCB2Q00722 1185 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 POU5F1BQ06416 359 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 DMC1Q14565 340 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 UPP1Q16831 310 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 XKR9Q5GH70 373 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 GLRA4Q5JXX5 417 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 TPGS2Q68CL5 300 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 CCNI2Q6ZMN8 369 aaPredicted RBP10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 SYT13Q7L8C5 426 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 OTUD6AQ7L8S5 288 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 FBXL16Q8N461 479 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 PNPLA1Q8N8W4 532 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 BICD2Q8TD16 824 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 BPIFB1Q8TDL5 484 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 ASAP3Q8TDY4 903 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 GTPBP2Q9BX10 602 aaKnown RBP10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 SLKQ9H2G2 1235 aaPredicted RBP10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 GOLGA2P5Q9HBQ8 144 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 FSCN3Q9NQT6 498 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 FBXL5Q9UKA1 691 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 TPCN1Q9ULQ1 816 aa10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 NAP1L2Q9ULW6 460 aaPredicted RBP10.67□□□□□ -0.7
SMARCB1-206ENST00000477836 PLXNB3Q9ULL4 1909 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 NUP210Q8TEM1 1887 aaPredicted RBP10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 KLF18A0A0U1RQI7 1052 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 H7C4K7 107 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 TK2O00142 265 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 TRDMT1O14717 391 aaKnown RBP10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 ZBTB39O15060 712 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 LARGE1O95461 756 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 P4HBP07237 508 aaKnown RBP10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 ARMCX6Q7L4S7 300 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 TMC8Q8IU68 726 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 NOSTRINQ8IVI9 506 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 TSTD1Q8NFU3 115 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 ETNPPLQ8TBG4 499 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 TBCKQ8TEA7 893 aa10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 LARP6Q9BRS8 491 aaKnown RBP10.66□□□□□ -0.7
SMARCB1-206ENST00000477836 LRRC3Q9BY71 257 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms