RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SPACA3Q8IXA5 215 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 TCEAL8Q8IYN2 117 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 CMTR1Q8N1G2 835 aaKnown RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 SRBD1Q8N5C6 995 aaKnown RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 ZNF579Q8NAF0 562 aaKnown RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 C3orf58Q8NDZ4 430 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 TSTD1Q8NFU3 115 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 SNIP1Q8TAD8 396 aaKnown RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 ZNF461Q8TAF7 563 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 CPB2Q96IY4 423 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 FAM167AQ96KS9 214 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 PSMG3-AS1Q96PY0 264 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 UBAC1Q9BSL1 405 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 SPZ1Q9BXG8 430 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 SMG9Q9H0W8 520 aaKnown RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 DNAJC25Q9H1X3 360 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 CRISPLD1Q9H336 500 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 IL21RQ9HBE5 538 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 CPNE5Q9HCH3 593 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 SUCLA2Q9P2R7 463 aaPredicted RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 SEPT9Q9UHD8 586 aaPredicted RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 TBX20Q9UMR3 447 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 BTBD3Q9Y2F9 522 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 PAXBP1Q9Y5B6 917 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 PCDHA10Q9Y5I2 948 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 TTC41PQ6P2S7 1318 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 PCNX1Q96RV3 2341 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 OTOGQ6ZRI0 2925 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 GOLGA8CPA6NN73 597 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 PRRG1O14668 218 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 TRIM66O15016 1216 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 EDIL3O43854 480 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 NR1I2O75469 434 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 PSAPP07602 524 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 HLA-EP13747 358 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 ATF2P15336 505 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 HOXD12P35452 270 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 SREBF1P36956 1147 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 BRCC3P46736 316 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 BNC1Q01954 994 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 CCDC173Q0VFZ6 552 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 MESP2Q0VG99 397 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 TWF1Q12792 350 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 TUSC3Q13454 348 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 PTPRNQ16849 979 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 CYP4A22Q5TCH4 519 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.36□□□□□ -1.55
USP4-209ENST00000475873 NIPA1Q7RTP0 329 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 ERICH1Q86X53 443 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 PLA2G4DQ86XP0 818 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 USP33Q8TEY7 942 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 GJA10Q969M2 543 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 E2F7Q96AV8 911 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 LENG9Q96B70 501 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 MED8Q96G25 268 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 GPATCH3Q96I76 525 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 ANO3Q9BYT9 981 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 EBF3Q9H4W6 596 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 SLITRK6Q9H5Y7 841 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 PRDM16Q9HAZ2 1276 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 CYP4F11Q9HBI6 524 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 UBN1Q9NPG3 1134 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 GKN1Q9NS71 199 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 CCL26Q9Y258 94 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 GIT1Q9Y2X7 761 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 PCDHB9Q9Y5E1 797 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 BACE2Q9Y5Z0 518 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 TAF6LQ9Y6J9 622 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 TRIP11Q15643 1979 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 ADGRG4Q8IZF6 3080 aa5.36□□□□□ -1.55
USP4-209ENST00000475873 B4GALT5O43286 388 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 MYF5P13349 255 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 RHDQ02161 417 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 KCNH2Q12809 1159 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 GRIK2Q13002 908 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 RUNX3Q13761 415 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 UBAP2LQ14157 1087 aaKnown RBP5.35□□□□□ -1.55
USP4-209ENST00000475873 CRY1Q16526 586 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 C2orf27AQ580R0 203 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 ARHGAP40Q5TG30 622 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 PLA2G4FQ68DD2 849 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 DHRS13Q6UX07 377 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 DBX2Q6ZNG2 339 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 LRRC69Q6ZNQ3 347 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 SMAP1Q8IYB5 467 aaPredicted RBP5.35□□□□□ -1.55
USP4-209ENST00000475873 CCDC33Q8N5R6 958 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 CNNM3Q8NE01 707 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 BPIFB1Q8TDL5 484 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 TSC1Q92574 1164 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 RRP36Q96EU6 259 aaKnown RBP5.35□□□□□ -1.55
USP4-209ENST00000475873 P2RY13Q9BPV8 354 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 NIFKQ9BYG3 293 aaKnown RBP5.35□□□□□ -1.55
USP4-209ENST00000475873 INO80BQ9C086 356 aaPredicted RBP5.35□□□□□ -1.55
USP4-209ENST00000475873 CSRNP2Q9H175 543 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 ASAH2Q9NR71 780 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 OBP2AQ9NY56 170 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 FNDC3AQ9Y2H6 1198 aaKnown RBP5.35□□□□□ -1.55
USP4-209ENST00000475873 COL4A3BPQ9Y5P4 624 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 STK24Q9Y6E0 443 aa5.35□□□□□ -1.55
USP4-209ENST00000475873 CELSR2Q9HCU4 2923 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms