RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 TTC8Q8TAM2 541 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 SHKBP1Q8TBC3 707 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 ZSCAN18Q8TBC5 510 aaPredicted RBP13.37□□□□□ -0.27
HDAC3-204ENST00000469207 FAM3CQ92520 227 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 NELL1Q92832 810 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 SMARCD2Q92925 531 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 KIF12Q96FN5 646 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 LRRC3BQ96PB8 259 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 LRRC3Q9BY71 257 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 DNAJC25Q9H1X3 360 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 C17orf75Q9HAS0 396 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 SH2B1Q9NRF2 756 aaPredicted RBP13.37□□□□□ -0.27
HDAC3-204ENST00000469207 DLL3Q9NYJ7 618 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 NCDNQ9UBB6 729 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 PCDHB8Q9UN66 801 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 CITO14578 2027 aa13.37□□□□□ -0.27
HDAC3-204ENST00000469207 A0A1W2PRU2 124 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 HEPACAM2A8MVW5 462 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 M0QZQ0 153 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 LAD1O00515 517 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 LILRB5O75023 590 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 MICAL2O94851 1124 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 CCNE1P24864 410 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 RPS9P46781 194 aaKnown RBP13.36□□□□□ -0.27
HDAC3-204ENST00000469207 SOX9P48436 509 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 SMTNP53814 917 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 ATP2C1P98194 919 aaPredicted RBP13.36□□□□□ -0.27
HDAC3-204ENST00000469207 YWHAHQ04917 246 aaPredicted RBP13.36□□□□□ -0.27
HDAC3-204ENST00000469207 GAS6Q14393 721 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 PUM1Q14671 1186 aaKnown RBP eCLIP13.36□□□□□ -0.27
HDAC3-204ENST00000469207 WDR44Q5JSH3 913 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 HYIQ5T013 277 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 HAUS6Q7Z4H7 955 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 ELMOD1Q8N336 334 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 ATAD1Q8NBU5 361 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 IRF7Q92985 503 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 FAM212AQ96EL1 285 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 YIPF1Q9Y548 306 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 PCDHGA2Q9Y5H1 932 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 PIAS3Q9Y6X2 628 aa13.36□□□□□ -0.27
HDAC3-204ENST00000469207 ZNF263O14978 683 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 SPTLC1O15269 473 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 OAZ2O95190 189 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 CLTAP09496 248 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 TDGF1P13385 188 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 TGM1P22735 817 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 LRPAP1P30533 357 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 MAGEA9P43362 315 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 EPHA5P54756 1037 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 DMWDQ09019 674 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 ENOX2Q16206 610 aaKnown RBP13.35□□□□□ -0.27
HDAC3-204ENST00000469207 ZPBP2Q6X784 338 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 DSTYKQ6XUX3 929 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 TMC8Q8IU68 726 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 MFSD6LQ8IWD5 586 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 BEST2Q8NFU1 509 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 DNASE1L2Q92874 299 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 BICD1Q96G01 975 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 ZFYVE19Q96K21 471 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 SLITRK6Q9H5Y7 841 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 PARD6AQ9NPB6 346 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 PRMT8Q9NR22 394 aaPredicted RBP13.35□□□□□ -0.27
HDAC3-204ENST00000469207 ASAH2Q9NR71 780 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 RBM12Q9NTZ6 932 aaKnown RBP13.35□□□□□ -0.27
HDAC3-204ENST00000469207 C2orf42Q9NWW7 574 aa13.35□□□□□ -0.27
HDAC3-204ENST00000469207 SMG5Q9UPR3 1016 aaKnown RBP13.35□□□□□ -0.27
HDAC3-204ENST00000469207 MRPS17Q9Y2R5 130 aaKnown RBP13.35□□□□□ -0.27
HDAC3-204ENST00000469207 F5P12259 2224 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 ARNTLO00327 626 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 MAN2B1O00754 1011 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 FAM189A1O60320 539 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 CD2BP2O95400 341 aaKnown RBP13.34□□□□□ -0.27
HDAC3-204ENST00000469207 CHRNB1P11230 501 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 ATXN1P54253 815 aaKnown RBP13.34□□□□□ -0.27
HDAC3-204ENST00000469207 NCKAP1LP55160 1127 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 SATB1Q01826 763 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 GRIN1Q05586 938 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 C8orf34Q49A92 452 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 TMEM119Q4V9L6 283 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 CENPPQ6IPU0 288 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 SLC39A4Q6P5W5 647 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 GAREM2Q75VX8 874 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 USP37Q86T82 979 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 REEP2Q9BRK0 252 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 MKNK1Q9BUB5 465 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 TIPINQ9BVW5 301 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 EPC1Q9H2F5 836 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 IKZF4Q9H2S9 585 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 CHRDQ9H2X0 955 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 PLEKHA5Q9HAU0 1116 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 DAXXQ9UER7 740 aaPredicted RBP13.34□□□□□ -0.27
HDAC3-204ENST00000469207 TBX20Q9UMR3 447 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 UBQLN1Q9UMX0 589 aaKnown RBP13.34□□□□□ -0.27
HDAC3-204ENST00000469207 TICRRQ7Z2Z1 1910 aa13.34□□□□□ -0.27
HDAC3-204ENST00000469207 PDCD11Q14690 1871 aaKnown RBP13.33□□□□□ -0.27
HDAC3-204ENST00000469207 MYH11P35749 1972 aa13.33□□□□□ -0.28
HDAC3-204ENST00000469207 DCDC2BA2VCK2 349 aa13.33□□□□□ -0.28
HDAC3-204ENST00000469207 MTMR11A4FU01 709 aa13.33□□□□□ -0.28
HDAC3-204ENST00000469207 SLC38A8A6NNN8 435 aa13.33□□□□□ -0.28
HDAC3-204ENST00000469207 TISP43B9A030 160 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms