RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ERP27Q96DN0 273 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 RBM15Q96T37 977 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS53-204ENST00000437048 BTBD3Q9Y2F9 522 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 USP1O94782 785 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 PKP1Q13835 747 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 TNFAIP8L3Q5GJ75 292 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 FAM47EQ6ZV65 393 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 SAMD3Q8N6K7 520 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 EFHD2Q96C19 240 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 UBXN6Q9BZV1 441 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 NCOA5Q9HCD5 579 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 VPS45Q9NRW7 570 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 EMC3Q9P0I2 261 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 H2AFY2Q9P0M6 372 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 WDR37Q9Y2I8 494 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 POLBP06746 335 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 SOX5P35711 763 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 MAGEA10P43363 369 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 RABL6Q3YEC7 729 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 ZNF667Q5HYK9 610 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 CDC73Q6P1J9 531 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 C1orf228Q6PIY5 440 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 FAM133AQ8N9E0 248 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 Q96MT0 163 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 TAF4O00268 1085 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 MSL3P1P0C860 447 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 RASA1P20936 1047 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 PMS1P54277 932 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 GEMIN4P57678 1058 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 SLC10A5Q5PT55 438 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 C15orf40Q8WUR7 153 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 TRIM51Q9BSJ1 452 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 USP42Q9H9J4 1324 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 RNF17Q9BXT8 1623 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 KPNA3O00505 521 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 DNALI1O14645 258 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 ENC1O14682 589 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 WBP4O75554 376 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 PAX3P23760 479 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 XKRXQ6PP77 449 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 B3GALT6Q96L58 329 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 DEPDC7Q96QD5 511 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 ZNF518BQ9C0D4 1074 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 RMND5AQ9H871 391 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 MANSC1Q9H8J5 431 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 ING4Q9UNL4 249 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 SUGT1Q9Y2Z0 365 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 FHOD1Q9Y613 1164 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 NUP153P49790 1475 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 PNMA6FA0A0J9YX94 578 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 SH2B2O14492 632 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 BMP10O95393 424 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 OSBPP22059 807 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 CRKP46108 304 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 EFNA5P52803 228 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 CHRNB3Q05901 458 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 XKR9Q5GH70 373 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 DNAJB7Q7Z6W7 309 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 RNF139Q8WU17 664 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 DBNDD2Q9BQY9 259 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 UGT2B28Q9BY64 529 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 ADAMTS1Q9UHI8 967 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 TAGLN3Q9UI15 199 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS53-204ENST00000437048 SPHKAPQ2M3C7 1700 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 CPA3P15088 417 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 STK4Q13043 487 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 NANOGNBQ7Z5D8 188 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 GDAP1Q8TB36 358 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 ZNF564Q8TBZ8 553 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 SLC9A2Q9UBY0 812 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 TBK1Q9UHD2 729 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 MFHAS1Q9Y4C4 1052 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 MYH9P35579 1960 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 NEURL1BA8MQ27 555 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 OCM2P0CE71 109 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 OCMP0CE72 109 aaPredicted RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 MYL2P10916 166 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 CCNA2P20248 432 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 IFNGR2P38484 337 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 CYP4Z1Q86W10 505 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 ZNF513Q8N8E2 541 aaPredicted RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 USP44Q9H0E7 712 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 KLHL8Q9P2G9 620 aaPredicted RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 RABL2AQ9UBK7 228 aaPredicted RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 RABL2BQ9UNT1 228 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 SHOC2Q9UQ13 582 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 PIGBOS1A0A0B4J2F0 54 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 RORBQ92753 470 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 SMYD3Q9H7B4 428 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 RPRD1BQ9NQG5 326 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 KMT5AQ9NQR1 393 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 GINM1Q9NU53 330 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 TBX22Q9Y458 520 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 NEO1Q92859 1461 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 GNAT1P11488 350 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 GARTP22102 1010 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 IL13P35225 146 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 PIK3CGP48736 1102 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 NECTIN1Q15223 517 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms