RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZNF689Q96CS4 500 aaPredicted RBP10.83□□□□□ -0.68
CD44-207ENST00000425428 GDF15Q99988 308 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 SNX25Q9H3E2 840 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 NRDE2Q9H7Z3 1164 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 CYP3A43Q9HB55 503 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 GOLGA2P5Q9HBQ8 144 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 RNF19AQ9NV58 838 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 CXXC1Q9P0U4 656 aaPredicted RBP10.83□□□□□ -0.68
CD44-207ENST00000425428 CEP72Q9P209 647 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 PRG3Q9Y2Y8 225 aaPredicted RBP10.83□□□□□ -0.68
CD44-207ENST00000425428 PCDHA11Q9Y5I1 949 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 SF3B1O75533 1304 aaKnown RBP eCLIP10.83□□□□□ -0.688e-6■■■■■ 107
CD44-207ENST00000425428 PTPRJQ12913 1337 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 SCN1AP35498 2009 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 NRP1O14786 923 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 LPXNO60711 386 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 CST3P01034 146 aaPredicted RBP10.82□□□□□ -0.68
CD44-207ENST00000425428 USP8P40818 1118 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 GATMP50440 423 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 GUCY2FP51841 1108 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 WNT7BP56706 349 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 LILRA4P59901 499 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 POLR2FP61218 127 aaKnown RBP10.82□□□□□ -0.68
CD44-207ENST00000425428 HTRA4P83105 476 aaPredicted RBP10.82□□□□□ -0.68
CD44-207ENST00000425428 GCNT1Q02742 428 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 DSC1Q08554 894 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 FIGNQ5HY92 759 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 APTXQ7Z2E3 356 aaKnown RBP10.82□□□□□ -0.68
CD44-207ENST00000425428 ZNF280BQ86YH2 543 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 TDHQ8IZJ6 230 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 CRIPAKQ8N1N5 446 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 VWCEQ96DN2 955 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 PI4K2AQ9BTU6 479 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 VRTNQ9H8Y1 702 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 SPG21Q9NZD8 308 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 FBXL5Q9UKA1 691 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 ADAM28Q9UKQ2 775 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 PLAGL2Q9UPG8 496 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 SSX2IPQ9Y2D8 614 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 TMEM189-UBE2V1I3L0A0 370 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 CYB561D2O14569 222 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 DDHD2O94830 711 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 VNN1O95497 513 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 FAM163BP0C2L3 166 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 UCHL3P15374 230 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 STAT1P42224 750 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 GSDMDP57764 484 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 BPIFB4P59827 614 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 CUL2Q13617 745 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 ARHGAP44Q17R89 818 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 C9orf50Q5SZB4 431 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 KLHDC7AQ5VTJ3 777 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 KCNT2Q6UVM3 1135 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 TOP6BLQ8N6T0 577 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 SPATA18Q8TC71 538 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 CPLX3Q8WVH0 158 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.82□□□□□ -0.685e-38■■■■■ 698.7
CD44-207ENST00000425428 GDAP2Q9NXN4 497 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 SIX4Q9UIU6 781 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 DNAJC12Q9UKB3 198 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 MYO6Q9UM54 1294 aa10.82□□□□□ -0.68
CD44-207ENST00000425428 MKI67P46013 3256 aaKnown RBP10.81□□□□□ -0.68
CD44-207ENST00000425428 A0A1W2PQJ5 194 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 AKR1B15C9JRZ8 316 aaPredicted RBP10.81□□□□□ -0.68
CD44-207ENST00000425428 H7C4K7 107 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 MEFVO15553 781 aaPredicted RBP10.81□□□□□ -0.68
CD44-207ENST00000425428 GALTP07902 379 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 KRT5P13647 590 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 LHX1P48742 406 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 AFF1P51825 1210 aaKnown RBP10.81□□□□□ -0.68
CD44-207ENST00000425428 SOX4Q06945 474 aaPredicted RBP10.81□□□□□ -0.68
CD44-207ENST00000425428 CCDC173Q0VFZ6 552 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 RASIP1Q5U651 963 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 SCARA5Q6ZMJ2 495 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 RRAGAQ7L523 313 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 TMCO2Q7Z6W1 182 aaPredicted RBP10.81□□□□□ -0.68
CD44-207ENST00000425428 VPS36Q86VN1 386 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 COLGALT1Q8NBJ5 622 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 OR6B3Q8NGW1 331 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 SEMA4DQ92854 862 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 SENP8Q96LD8 212 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 PLVAPQ9BX97 442 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 OXCT2Q9BYC2 517 aaPredicted RBP10.81□□□□□ -0.68
CD44-207ENST00000425428 STK33Q9BYT3 514 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 NLRC4Q9NPP4 1024 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 DNAJB4Q9UDY4 337 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 SIK3Q9Y2K2 1263 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 PCDHB4Q9Y5E5 795 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 MRPL42Q9Y6G3 142 aaKnown RBP10.81□□□□□ -0.68
CD44-207ENST00000425428 NLRC5Q86WI3 1866 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 PTPRSQ13332 1948 aa10.81□□□□□ -0.68
CD44-207ENST00000425428 SYN3O14994 580 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 RB1P06400 928 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 PCSK1P29120 753 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 CA8P35219 290 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 CTNNB1P35222 781 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 GNL1P36915 607 aaPredicted RBP10.8□□□□□ -0.68
CD44-207ENST00000425428 SLC11A1P49279 550 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 ZBED6P86452 979 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 CREMQ03060 361 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms