RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 PHF13Q86YI8 300 aaPredicted RBP11.67□□□□□ -0.54
LIMS1-207ENST00000422797 CBWD2Q8IUF1 395 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 KIAA0825Q8IV33 1275 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 TMEM161BQ8NDZ6 487 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 ARMC2Q8NEN0 867 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 STK32AQ8WU08 396 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 ZNF570Q96NI8 536 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 CSRNP1Q96S65 589 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 TLE6Q9H808 572 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.67□□□□□ -0.54
LIMS1-207ENST00000422797 KCNH7Q9NS40 1196 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 DDX56Q9NY93 547 aaKnown RBP11.67□□□□□ -0.54
LIMS1-207ENST00000422797 L3MBTL1Q9Y468 752 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 LRRC42Q9Y546 428 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 UMODL1Q5DID0 1318 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 MYPNQ86TC9 1320 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 C2CD2LO14523 706 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 TM9SF1O15321 606 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 SLC16A4O15374 487 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 DHX15O43143 795 aaKnown RBP11.66□□□□□ -0.54
LIMS1-207ENST00000422797 NEBLO76041 1014 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 ITGB5P18084 799 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 RRM1P23921 792 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 TBXAS1P24557 533 aaPredicted RBP11.66□□□□□ -0.54
LIMS1-207ENST00000422797 CNGA1P29973 690 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 PEX3P56589 373 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 CLDN10P78369 228 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 KLHL38Q2WGJ6 581 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 TKFCQ3LXA3 575 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 HHATQ5VTY9 493 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 PLEKHA7Q6IQ23 1121 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 SV2AQ7L0J3 742 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 ERICH1Q86X53 443 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIMS1-207ENST00000422797 NLGN1Q8N2Q7 840 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 MCPH1Q8NEM0 835 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 TAS1R2Q8TE23 839 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 ATG4AQ8WYN0 398 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 ERP27Q96DN0 273 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 NAF1Q96HR8 494 aaKnown RBP11.66□□□□□ -0.54
LIMS1-207ENST00000422797 C8orf37Q96NL8 207 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 POP1Q99575 1024 aaKnown RBP11.66□□□□□ -0.54
LIMS1-207ENST00000422797 MYLK2Q9H1R3 596 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 KMT5AQ9NQR1 393 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 PARVAQ9NVD7 372 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 PNMA3Q9UL41 463 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 ANKRD31Q8N7Z5 1873 aa11.66□□□□□ -0.54
LIMS1-207ENST00000422797 ALOX15BO15296 676 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 LIASO43766 372 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 TBC1D12O60347 775 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 GH1P01241 217 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 ACADSP16219 412 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 CREB1P16220 341 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 KRT15P19012 456 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 GNAZP19086 355 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 PTPN4P29074 926 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 ADSSP30520 456 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 FOXN2P32314 431 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 GCKP35557 465 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 ECE1P42892 770 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 WDR4P57081 412 aaKnown RBP11.65□□□□□ -0.54
LIMS1-207ENST00000422797 SATB1Q01826 763 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 MGAT5Q09328 741 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 PSMD6Q15008 389 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 CCDC142Q17RM4 750 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 SHROOM1Q2M3G4 852 aaPredicted RBP11.65□□□□□ -0.54
LIMS1-207ENST00000422797 P3H1Q32P28 736 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 FAM102BQ5T8I3 360 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 C15orf39Q6ZRI6 1047 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 APBB1IPQ7Z5R6 666 aaPredicted RBP11.65□□□□□ -0.54
LIMS1-207ENST00000422797 CYP4X1Q8N118 509 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 KIF2BQ8N4N8 673 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 ALLCQ8N6M5 410 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 NKD2Q969F2 451 aaPredicted RBP11.65□□□□□ -0.54
LIMS1-207ENST00000422797 CCDC127Q96BQ5 260 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 SENP7Q9BQF6 1050 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 DCLRE1BQ9H816 532 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 QTRT2Q9H974 415 aaKnown RBP11.65□□□□□ -0.54
LIMS1-207ENST00000422797 PCDH9Q9HC56 1237 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 SAYSD1Q9NPB0 183 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 ZBTB21Q9ULJ3 1066 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 EFR3BQ9Y2G0 817 aa11.65□□□□□ -0.54
LIMS1-207ENST00000422797 ASTN2O75129 1339 aaPredicted RBP11.65□□□□□ -0.54
LIMS1-207ENST00000422797 DENND3A2RUS2 1198 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 EXTL3O43909 919 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 ECE2O60344 883 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 LSM8O95777 96 aaKnown RBP11.65□□□□□ -0.55
LIMS1-207ENST00000422797 IL1BP01584 269 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 CALB1P05937 261 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 ITGAVP06756 1048 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 FDX1P10109 184 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 ATP6V1C1P21283 382 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 IBSPP21815 317 aaPredicted RBP11.65□□□□□ -0.55
LIMS1-207ENST00000422797 NPTX2P47972 431 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 CACNB3P54284 484 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 NFX1Q12986 1120 aaKnown RBP11.65□□□□□ -0.55
LIMS1-207ENST00000422797 GRIK3Q13003 919 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 MTMR1Q13613 665 aa11.65□□□□□ -0.55
LIMS1-207ENST00000422797 LBRQ14739 615 aaKnown RBP11.65□□□□□ -0.55
LIMS1-207ENST00000422797 SGSM1Q2NKQ1 1148 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms