RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CCDC185Q8N715 623 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 RFT1Q96AA3 541 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 PIDD1Q9HB75 910 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 ENOPH1Q9UHY7 261 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 MYO3BQ8WXR4 1341 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 OTUD4Q01804 1114 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 CCNIQ14094 377 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 DMRT2Q9Y5R5 561 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 GNAT1P11488 350 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 IZUMO3Q5VZ72 239 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 TASP1Q9H6P5 420 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 AP3B2Q13367 1082 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 SLC39A14Q15043 492 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 SYCP2LQ5T4T6 812 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 TYW3Q6IPR3 259 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 CYP39A1Q9NYL5 469 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 CCDC157Q569K6 752 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 TAF2Q6P1X5 1199 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 PLA2G4BP0C869 781 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 PPP1R14BQ96C90 147 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 MTA3Q9BTC8 594 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 ARMC7Q9H6L4 198 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 BTBD18B2RXH4 712 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 WWP2O00308 870 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 SCGNO76038 276 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 HPGDP15428 266 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 CASP4P49662 377 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 RHAGQ02094 409 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 SMAD1Q15797 465 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 LRRC71Q8N4P6 559 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 POMGNT2Q8NAT1 580 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 MAGED4Q96JG8 741 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 KIAA1586Q9HCI6 787 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 FHOD1Q9Y613 1164 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 SNX4O95219 450 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 CHN1P15882 459 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 MCCD1P59942 119 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 CCDC36Q8IYA8 594 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 GIMAP8Q8ND71 665 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 NSL1Q96IY1 281 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 ADAMTS1Q9UHI8 967 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 ATP6V1HQ9UI12 483 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 MYL12AP19105 171 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 GTF2E2P29084 291 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 GUCY1A2P33402 732 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 PEX5P50542 639 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 MRPS25P82663 173 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 ORC2Q13416 577 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 NANOGNBQ7Z5D8 188 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 RHOT1Q8IXI2 618 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 ATPIF1Q9UII2 106 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 BTBD3Q9Y2F9 522 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 CCDC182A6NF36 153 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 PJA1Q8NG27 643 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 USP33Q8TEY7 942 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 ZC3H4Q9UPT8 1303 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 RALAP11233 206 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 SERPINB9P50453 376 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 YAF2Q8IY57 180 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 ATPAF2Q8N5M1 289 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 AP3D1O14617 1153 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 GFPT1Q06210 699 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 C11orf57Q6ZUT1 292 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 OTOAQ7RTW8 1153 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 WDR60Q8WVS4 1066 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 ERP27Q96DN0 273 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 RMND5AQ9H871 391 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 RMI1Q9H9A7 625 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 DKK3Q9UBP4 350 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 M0QYV0 167 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 MDH1P40925 334 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 GCKRQ14397 625 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 MAPK11Q15759 364 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 DPY19L2Q6NUT2 758 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 ZFRQ96KR1 1074 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 CCT8L2Q96SF2 557 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 KRT34O76011 436 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 ALOX15P16050 662 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 ZNF24P17028 368 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 NUDT2P50583 147 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 SLFN13Q68D06 897 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 MZT2BQ6NZ67 158 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 IFNL3Q8IZI9 196 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 RBBP8NLQ8NC74 664 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 PFASO15067 1338 aa13.91□□□□□ -0.18
CCDC88A-204ENST00000413716 KANSL1LA0AUZ9 987 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 USP17L12C9JPN9 530 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 USP17L21D6R901 530 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 ECE2O60344 883 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 BAIAP3O94812 1187 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 GNA15P30679 374 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 ZAP70P43403 619 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 HIST2H2ACQ16777 129 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 SLC27A3Q5K4L6 730 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 HIST2H2AA3Q6FI13 130 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 ARHGAP22Q7Z5H3 698 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 RDM1Q8NG50 284 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 C8orf4Q9NR00 106 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 PLXNC1O60486 1568 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms