RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TRAF3IP3Q9Y228 551 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 FMN2Q9NZ56 1722 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 KCNA2P16389 499 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 TPI1P60174 286 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 LRRC8EQ6NSJ5 796 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 WDR93Q6P2C0 686 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 C16orf87Q6PH81 154 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 DDIASQ8IXT1 998 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 JMJD4Q9H9V9 463 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 EHD2Q9NZN4 543 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 PAK5Q9P286 719 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 A0A087X0T9 212 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 HLA-DRAP01903 254 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 FAM228BP0C875 321 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 KLK7P49862 253 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 ALDH18A1P54886 795 aaKnown RBP12□□□□□ -0.49
PTPRF-203ENST00000372407 HHIPL2Q6UWX4 724 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 C3orf62Q6ZUJ4 267 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 ASIC4Q96FT7 647 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 AGAP3Q96P47 875 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 VCPKMTQ9H867 229 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 KIF20BQ96Q89 1820 aa12□□□□□ -0.49
PTPRF-203ENST00000372407 MAP2P11137 1827 aaKnown RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 SNRPAP09012 282 aaKnown RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 TXNP10599 105 aaKnown RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 KRT33BQ14525 404 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 ZNF235Q14590 738 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 CNGA3Q16281 694 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 FIGNQ5HY92 759 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 TTC23LQ6PF05 361 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 ASAP3Q8TDY4 903 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 MCEEQ96PE7 176 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 FUT8Q9BYC5 575 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 FAM129AQ9BZQ8 928 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 GOLPH3Q9H4A6 298 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 CST8O60676 142 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 LCP1P13796 627 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 GFAPP14136 432 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 CCND1P24385 295 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 HADHAP40939 763 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 LBRQ14739 615 aaKnown RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 ZNF677Q86XU0 584 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 DACH2Q96NX9 599 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 RSAD1Q9HA92 442 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 EML4Q9HC35 981 aaKnown RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 XPO7Q9UIA9 1087 aaKnown RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 ARHGAP26Q9UNA1 814 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 HPSEQ9Y251 543 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 ZNF142P52746 1687 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 MAFGO15525 162 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 HDAC4P56524 1084 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 PTGISQ16647 500 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 SPATA18Q8TC71 538 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 MMP19Q99542 508 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 MRGBPQ9NV56 204 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 ZNF212Q9UDV6 495 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 MARCOQ9UEW3 520 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 L1RE1Q9UN81 338 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 CHMP2BQ9UQN3 213 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 ZNF197O14709 1029 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 PRLRP16471 622 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 ERFP50548 548 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 ABCE1P61221 599 aaKnown RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 CENPCQ03188 943 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 RAD51Q06609 339 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 KCNA1Q09470 495 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 PDIA6Q15084 440 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 TBCCQ15814 346 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 RBM43Q6ZSC3 357 aaKnown RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 OR9Q1Q8NGQ5 310 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 AFG1LQ8WV93 481 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 RMDN1Q96DB5 314 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 OTUD5Q96G74 571 aa11.99□□□□□ -0.49
PTPRF-203ENST00000372407 PABPC3Q9H361 631 aaKnown RBP11.99□□□□□ -0.49
PTPRF-203ENST00000372407 KLHL2O95198 593 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 ESRRBO95718 433 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 NNMTP40261 264 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 RGS7P49802 495 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 ITGA8P53708 1063 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 LONP2Q86WA8 852 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 KRT35Q92764 455 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 HACL1Q9UJ83 578 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 MTO1Q9Y2Z2 717 aaKnown RBP11.98□□□□□ -0.49
PTPRF-203ENST00000372407 ROBO1Q9Y6N7 1651 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 WEE2P0C1S8 567 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 H2AFXP16104 143 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-203ENST00000372407 FNTAP49354 379 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 ERVK-24P63145 666 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 PTK7Q13308 1070 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 CDC42EP5Q6NZY7 148 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 SLC13A5Q86YT5 568 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-203ENST00000372407 PBXIP1Q96AQ6 731 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 DNAJC7Q99615 494 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 FRMD8Q9BZ67 464 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-203ENST00000372407 RUBCNLQ9H714 662 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 PLEKHA5Q9HAU0 1116 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 PCDHGB4Q9UN71 923 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 POLIQ9UNA4 740 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 B2RBV5 119 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 POLRMTO00411 1230 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms