RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ABLIM3O94929 683 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 ATF2P15336 505 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 MPLP40238 635 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 RBM25P49756 843 aaKnown RBP12.28□□□□□ -0.44
RTN3-204ENST00000354497 RARRES1P49788 294 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 STK3Q13188 491 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 BECN1Q14457 450 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 NPY5RQ15761 445 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 MAPK6Q16659 721 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 UPP1Q16831 310 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 CTXN3Q4LDR2 81 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 EEF1DP3Q658K8 133 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 SLC8B1Q6J4K2 584 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 C1orf228Q6PIY5 440 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 TXNDC11Q6PKC3 985 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 SLFN12Q8IYM2 578 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 TCEAL8Q8IYN2 117 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 GAB3Q8WWW8 586 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 RSPRY1Q96DX4 576 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 LOXL4Q96JB6 756 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 EDEM2Q9BV94 578 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 C2orf40Q9H1Z8 148 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 FZD8Q9H461 694 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.28□□□□□ -0.44
RTN3-204ENST00000354497 SNX14Q9Y5W7 946 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 ARNTLO00327 626 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 GIPC1O14908 333 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 CHADO15335 359 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 CPB1P15086 417 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 CTHP32929 405 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 CCDC173Q0VFZ6 552 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 DCAF4L1Q3SXM0 396 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 WDR44Q5JSH3 913 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 CPLX2Q6PUV4 134 aaKnown RBP12.28□□□□□ -0.44
RTN3-204ENST00000354497 CD300LGQ6UXG3 332 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 HAUS6Q7Z4H7 955 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 DEPTORQ8TB45 409 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 E2F7Q96AV8 911 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 ZFYVE19Q96K21 471 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 PPP1R10Q96QC0 940 aaKnown RBP12.28□□□□□ -0.44
RTN3-204ENST00000354497 LARP6Q9BRS8 491 aaKnown RBP12.28□□□□□ -0.44
RTN3-204ENST00000354497 TRPV4Q9HBA0 871 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 CEP72Q9P209 647 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 FBXL5Q9UKA1 691 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 SLC8A2Q9UPR5 921 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 NUB1Q9Y5A7 615 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 RALGAPA1Q6GYQ0 2036 aa12.28□□□□□ -0.44
RTN3-204ENST00000354497 A0A1W2PRU2 124 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 PODXLO00592 558 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 PPP1R37O75864 691 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 LYPLA2O95372 231 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 EDN1P05305 212 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 PTMAP06454 111 aaKnown RBP12.27□□□□□ -0.45
RTN3-204ENST00000354497 ATP2B1P20020 1258 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 CDK11BP21127 795 aaKnown RBP12.27□□□□□ -0.45
RTN3-204ENST00000354497 YARSP54577 528 aaKnown RBP12.27□□□□□ -0.45
RTN3-204ENST00000354497 FAM187BQ17R55 369 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 CDCA2Q69YH5 1023 aaPredicted RBP12.27□□□□□ -0.45
RTN3-204ENST00000354497 RALGPS2Q86X27 583 aaPredicted RBP12.27□□□□□ -0.45
RTN3-204ENST00000354497 CEP120Q8N960 986 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 LEMD2Q8NC56 503 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 SHKBP1Q8TBC3 707 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 ADAM33Q9BZ11 813 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 VPS45Q9NRW7 570 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 GTSE1Q9NYZ3 720 aa12.27□□□□□ -0.45
RTN3-204ENST00000354497 ATRXP46100 2492 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 MYBPHLA2RUH7 354 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 C4orf47A7E2U8 309 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 ACKR2O00590 384 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 TOP3BO95985 862 aaKnown RBP12.26□□□□□ -0.45
RTN3-204ENST00000354497 RAP1GAPP47736 663 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 MLLT6P55198 1093 aaPredicted RBP12.26□□□□□ -0.45
RTN3-204ENST00000354497 OSTNP61366 133 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 SOX4Q06945 474 aaPredicted RBP12.26□□□□□ -0.45
RTN3-204ENST00000354497 CALCRLQ16602 461 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 STXBP5Q5T5C0 1151 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 TPGS2Q68CL5 300 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 ZNF280DQ6N043 979 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 KDF1Q8NAX2 398 aaPredicted RBP12.26□□□□□ -0.45
RTN3-204ENST00000354497 MCPH1Q8NEM0 835 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 OXER1Q8TDS5 423 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 BSNDQ8WZ55 320 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 HSD17B14Q9BPX1 270 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 GPR88Q9GZN0 384 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 GRPEL1Q9HAV7 217 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 RYDENQ9NUL5 291 aaKnown RBP12.26□□□□□ -0.45
RTN3-204ENST00000354497 GEMIN8Q9NWZ8 242 aaKnown RBP12.26□□□□□ -0.45
RTN3-204ENST00000354497 PCDHA12Q9UN75 941 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 LHX6Q9UPM6 363 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 YIPF1Q9Y548 306 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 PCDHGA5Q9Y5G8 931 aa12.26□□□□□ -0.45
RTN3-204ENST00000354497 SMIM28A0A1B0GU29 152 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 FAM205CA6NFA0 338 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 SRRM3A6NNA2 597 aaPredicted RBP12.25□□□□□ -0.45
RTN3-204ENST00000354497 SYN3O14994 580 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 CDC45O75419 566 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 XBP1P17861 261 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 PSMA5P28066 241 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 HOXA6P31267 233 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 MCM4P33991 863 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms