RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 KRT16P08779 473 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 MAPK7Q13164 816 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 MKRN4PQ13434 485 aaPredicted RBP18.19■□□□□ 0.5
SYNPO-201ENST00000307662 DMC1Q14565 340 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 SZRD1Q7Z422 152 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 CNBD2Q96M20 576 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 WDR35Q9P2L0 1181 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 NLRP9Q7RTR0 991 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 PPHLN1Q8NEY8 458 aaKnown RBP18.19■□□□□ 0.5
SYNPO-201ENST00000307662 DCLRE1BQ9H816 532 aa18.19■□□□□ 0.5
SYNPO-201ENST00000307662 KIAA0391O15091 583 aaKnown RBP18.18■□□□□ 0.5
SYNPO-201ENST00000307662 PDHBP11177 359 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 GNAT1P11488 350 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 TCN1P20061 433 aaPredicted RBP18.18■□□□□ 0.5
SYNPO-201ENST00000307662 MXD4Q14582 209 aaPredicted RBP18.18■□□□□ 0.5
SYNPO-201ENST00000307662 DDHD1Q8NEL9 900 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 TIPINQ9BVW5 301 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 UBA6A0AVT1 1052 aaPredicted RBP18.18■□□□□ 0.5
SYNPO-201ENST00000307662 VCAM1P19320 739 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 CRKP46108 304 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 ADRM1Q16186 407 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 TRIM60Q495X7 471 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 NAIF1Q69YI7 327 aaPredicted RBP18.18■□□□□ 0.5
SYNPO-201ENST00000307662 ARHGAP27Q6ZUM4 889 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 TAGAPQ8N103 731 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 CAVIN3Q969G5 261 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 CAAP1Q9H8G2 361 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 MYO1DO94832 1006 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 PLEKP08567 350 aaPredicted RBP18.18■□□□□ 0.5
SYNPO-201ENST00000307662 GHRP10912 638 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 GFAPP14136 432 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 PLOD1Q02809 727 aaPredicted RBP18.18■□□□□ 0.5
SYNPO-201ENST00000307662 UGP2Q16851 508 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 LMBRD2Q68DH5 695 aaPredicted RBP18.18■□□□□ 0.5
SYNPO-201ENST00000307662 KCNB2Q92953 911 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 TASP1Q9H6P5 420 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 RGL1Q9NZL6 768 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 PAK5Q9P286 719 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 PXDNLA1KZ92 1463 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 LOC100653049A0A140TA62 436 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 KRT34O76011 436 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 MYBP10242 640 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 NFKBIAP25963 317 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 THEM5Q8N1Q8 247 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 MCEEQ96PE7 176 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 FAM118BQ9BPY3 351 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 RAVER2Q9HCJ3 691 aaKnown RBP18.18■□□□□ 0.5
SYNPO-201ENST00000307662 HEY2Q9UBP5 337 aa18.18■□□□□ 0.5
SYNPO-201ENST00000307662 ADORA2BP29275 332 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 SKOR1P84550 965 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 PATL1Q86TB9 770 aaKnown RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 ANKRD27Q96NW4 1050 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 HNRNPRO43390 633 aaKnown RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 LAMB3Q13751 1172 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 SLC10A5Q5PT55 438 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 EP400NLQ6ZTU2 488 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 ARID3BQ8IVW6 561 aaPredicted RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 NSUN6Q8TEA1 469 aaKnown RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 TTC33Q6PID6 262 aaPredicted RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 SLC13A5Q86YT5 568 aaPredicted RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 PPIL6Q8IXY8 311 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 PDCD6IPQ8WUM4 868 aaKnown RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 FAM49AQ9H0Q0 323 aaPredicted RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 CASS4Q9NQ75 786 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 PTPRUQ92729 1446 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 POLR1AO95602 1720 aaPredicted RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 ZSCAN9O15535 394 aaPredicted RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 SPRP35270 261 aaPredicted RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 USP10Q14694 798 aaKnown RBP18.17■□□□□ 0.5
SYNPO-201ENST00000307662 TRIM16LQ309B1 348 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 SP110Q9HB58 689 aa18.17■□□□□ 0.5
SYNPO-201ENST00000307662 CACNB3P54284 484 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 LZICQ8WZA0 190 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 BNIP3LO60238 219 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 CAND2O75155 1236 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 SNUPNO95149 360 aaKnown RBP18.16■□□□□ 0.5
SYNPO-201ENST00000307662 ZCCHC18P0CG32 403 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 CCDC15Q0P6D6 951 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 OVGP1Q12889 678 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 RTKN2Q8IZC4 609 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 FAM84BQ96KN1 310 aaPredicted RBP18.16■□□□□ 0.5
SYNPO-201ENST00000307662 AIPL1Q9NZN9 384 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 F5H6K3 240 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 AP5Z1O43299 807 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 MAP3K7CLP57077 242 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 KLRC3Q07444 240 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 IL25Q9H293 177 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 CAPN6Q9Y6Q1 641 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 ATMINO43313 823 aaPredicted RBP18.16■□□□□ 0.5
SYNPO-201ENST00000307662 SERPINI2O75830 405 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 YWHABP31946 246 aaKnown RBP18.16■□□□□ 0.5
SYNPO-201ENST00000307662 CDK17Q00537 523 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 KRT72Q14CN4 511 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 SEPT12Q8IYM1 358 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 TSPAN17Q96FV3 270 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 PAPOLBQ9NRJ5 636 aaKnown RBP18.16■□□□□ 0.5
SYNPO-201ENST00000307662 SUGT1Q9Y2Z0 365 aa18.16■□□□□ 0.5
SYNPO-201ENST00000307662 ADRA2BP18089 450 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 GRIN1Q05586 938 aa18.15■□□□□ 0.5
SYNPO-201ENST00000307662 AASDHQ4L235 1098 aaPredicted RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms