RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 NCAPD2Q15021 1401 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ATP7BP35670 1465 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 KRT34O76011 436 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 FARP2O94887 1054 aaPredicted RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 AFPP02771 609 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PFKFB1P16118 471 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PSMC2P35998 433 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 GJC1P36383 396 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 MAGEA2P43356 314 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 MAPKAPK2P49137 400 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 RPL26P61254 145 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 SLC34A1Q06495 639 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PPM1LQ5SGD2 360 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 LCORLQ8N3X6 602 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 SNX31Q8N9S9 440 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ITPKCQ96DU7 683 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 SENP7Q9BQF6 1050 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 RNPEPL1Q9HAU8 725 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 METTL5Q9NRN9 209 aaKnown RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 L1RE1Q9UN81 338 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PTPRGP23470 1445 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PEPDP12955 493 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 UQCRBP14927 111 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 H2AFXP16104 143 aaPredicted RBP5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PPP3CCP48454 512 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ERO1BQ86YB8 467 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ZSWIM6Q9HCJ5 1215 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ZBTB1Q9Y2K1 713 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 PCDHGA10Q9Y5H3 936 aa5.06□□□□□ -1.6
CSMD3-201ENST00000297405 ANKARQ7Z5J8 1434 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 RNF103O00237 685 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 AKAP10O43572 662 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 FOSP01100 380 aaPredicted RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 FGGP02679 453 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 THRAP10827 490 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 MAPK1P28482 360 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 DDR2Q16832 855 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 LONRF3Q496Y0 759 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 KLHL17Q6TDP4 642 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CDHR1Q96JP9 859 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PTTG2Q9NZH5 202 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 POGZQ7Z3K3 1410 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 C21orf2O43822 256 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ACADLP28330 430 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 TRIM23P36406 574 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 VBP1P61758 197 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PTGISQ16647 500 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ARHGEF16Q5VV41 709 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 TMPRSS6Q8IU80 811 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 NEDD1Q8NHV4 660 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 RNF34Q969K3 372 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 AIF1LQ9BQI0 150 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ARHGEF10LQ9HCE6 1279 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 AVENQ9NQS1 362 aaPredicted RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 HERC5Q9UII4 1024 aaKnown RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 HPCAL4Q9UM19 191 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 GRIN2BQ13224 1484 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PSMD14O00487 310 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PTPN4P29074 926 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 RASSF6Q6ZTQ3 369 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 TCAIMQ8N3R3 496 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ARL10Q8N8L6 244 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PSMB7Q99436 277 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PCDH18Q9HCL0 1135 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 KCND1Q9NSA2 647 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 SEC14L4Q9UDX3 406 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 SMCO3A2RU48 225 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ZBTB24O43167 697 aaPredicted RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 GPBP1Q86WP2 473 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 GALNT15Q8N3T1 639 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 TUBGCP5Q96RT8 1024 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 INTS2Q9H0H0 1204 aaKnown RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 WHRNQ9P202 907 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 TTC7AQ9ULT0 858 aaPredicted RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 SNX12Q9UMY4 172 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 DTNAQ9Y4J8 743 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 LGALS16A8MUM7 142 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 DDAH1O94760 285 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CAPGP40121 348 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ADCY1Q08828 1119 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CAMK1DQ8IU85 385 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 DRAXINQ8NBI3 349 aaPredicted RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 DQX1Q8TE96 717 aaKnown RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ATXN2LQ8WWM7 1075 aaKnown RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CAVIN3Q969G5 261 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 ZC3H10Q96K80 434 aaKnown RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 OSBPL10Q9BXB5 764 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 NYXQ9GZU5 481 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CDYLQ9Y232 598 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 SAMD9LQ8IVG5 1584 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 GRIK1P39086 918 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CASP5P51878 434 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 CSNK2BP67870 215 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 SLC15A2Q16348 729 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 TTC6Q86TZ1 520 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 U2AF1L4Q8WU68 220 aaKnown RBP5.05□□□□□ -1.6
CSMD3-201ENST00000297405 PROX1Q92786 737 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 OSBPL11Q9BXB4 747 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 GIN1Q9NXP7 522 aa5.05□□□□□ -1.6
CSMD3-201ENST00000297405 LRWD1Q9UFC0 647 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms