RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ROBO1Q9Y6N7 1651 aa30.07■■■□□ 2.41
CLN3-262ENST00000637699 NKTRP30414 1462 aaKnown RBP30.06■■■□□ 2.4
CLN3-262ENST00000637699 RPRD2Q5VT52 1461 aaKnown RBP30.06■■■□□ 2.4
CLN3-262ENST00000637699 PPP1R15AO75807 674 aaPredicted RBP30.05■■■□□ 2.4
CLN3-262ENST00000637699 NWD1Q149M9 1564 aa30.05■■■□□ 2.4
CLN3-262ENST00000637699 MSH6P52701 1360 aa30.04■■■□□ 2.4
CLN3-262ENST00000637699 ZFYVE9O95405 1425 aa30.03■■■□□ 2.4
CLN3-262ENST00000637699 HDGFP51858 240 aaKnown RBP30.02■■■□□ 2.4
CLN3-262ENST00000637699 RIMS2Q9UQ26 1411 aa30.02■■■□□ 2.4
CLN3-262ENST00000637699 PLEKHG1Q9ULL1 1385 aa30.02■■■□□ 2.4
CLN3-262ENST00000637699 MYO5BQ9ULV0 1848 aa30.01■■■□□ 2.4
CLN3-262ENST00000637699 CHGAP10645 457 aaKnown RBP30.01■■■□□ 2.39
CLN3-262ENST00000637699 SLAIN2Q9P270 581 aa30.01■■■□□ 2.39
CLN3-262ENST00000637699 POTEAQ6S8J7 498 aa30■■■□□ 2.39
CLN3-262ENST00000637699 GCC2Q8IWJ2 1684 aa29.99■■■□□ 2.39
CLN3-262ENST00000637699 TMEM131LA2VDJ0 1609 aa29.96■■■□□ 2.39
CLN3-262ENST00000637699 CHD2O14647 1828 aaKnown RBP29.95■■■□□ 2.39
CLN3-262ENST00000637699 NUTM2DQ5VT03 806 aaPredicted RBP29.95■■■□□ 2.39
CLN3-262ENST00000637699 TBX22Q9Y458 520 aa29.94■■■□□ 2.38
CLN3-262ENST00000637699 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.93■■■□□ 2.38
CLN3-262ENST00000637699 C14orf37Q86TY3 774 aa29.91■■■□□ 2.38
CLN3-262ENST00000637699 PHLPP1O60346 1717 aa29.91■■■□□ 2.38
CLN3-262ENST00000637699 UNC13BO14795 1591 aa29.9■■■□□ 2.38
CLN3-262ENST00000637699 E9PCH4 1651 aa29.88■■■□□ 2.37
CLN3-262ENST00000637699 JCADQ9P266 1359 aa29.88■■■□□ 2.37
CLN3-262ENST00000637699 ADAMTS13Q76LX8 1427 aa29.85■■■□□ 2.37
CLN3-262ENST00000637699 NCOA3Q9Y6Q9 1424 aa29.83■■■□□ 2.37
CLN3-262ENST00000637699 ROCK1Q13464 1354 aa29.83■■■□□ 2.37
CLN3-262ENST00000637699 ITGAEP38570 1179 aa29.82■■■□□ 2.36
CLN3-262ENST00000637699 NUP155O75694 1391 aa29.81■■■□□ 2.36
CLN3-262ENST00000637699 ATF3P18847 181 aa29.8■■■□□ 2.36
CLN3-262ENST00000637699 C19orf44Q9H6X5 657 aa29.8■■■□□ 2.36
CLN3-262ENST00000637699 IQGAP3Q86VI3 1631 aa29.8■■■□□ 2.36
CLN3-262ENST00000637699 CADPS2Q86UW7 1296 aa29.79■■■□□ 2.36
CLN3-262ENST00000637699 COL16A1Q07092 1604 aaPredicted RBP29.78■■■□□ 2.36
CLN3-262ENST00000637699 PIK3R4Q99570 1358 aa29.78■■■□□ 2.36
CLN3-262ENST00000637699 DIP2AQ14689 1571 aa29.77■■■□□ 2.36
CLN3-262ENST00000637699 AMOTL2Q9Y2J4 779 aa29.77■■■□□ 2.36
CLN3-262ENST00000637699 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.76■■■□□ 2.36
CLN3-262ENST00000637699 MEX3CQ5U5Q3 659 aaKnown RBP29.73■■■□□ 2.35
CLN3-262ENST00000637699 SPATA31A6Q5VVP1 1343 aa29.72■■■□□ 2.35
CLN3-262ENST00000637699 PTPRUQ92729 1446 aa29.72■■■□□ 2.35
CLN3-262ENST00000637699 TRPM2O94759 1503 aa29.72■■■□□ 2.35
CLN3-262ENST00000637699 LRP6O75581 1613 aa29.71■■■□□ 2.35
CLN3-262ENST00000637699 PPARGC1BQ86YN6 1023 aaKnown RBP29.7■■■□□ 2.35
CLN3-262ENST00000637699 SETD1AO15047 1707 aaKnown RBP29.7■■■□□ 2.34
CLN3-262ENST00000637699 AHDC1Q5TGY3 1603 aaPredicted RBP29.67■■■□□ 2.34
CLN3-262ENST00000637699 ZNF326Q5BKZ1 582 aaKnown RBP29.67■■■□□ 2.34
CLN3-262ENST00000637699 BRINP3Q76B58 766 aa29.67■■■□□ 2.34
CLN3-262ENST00000637699 ZNF772Q68DY9 489 aaPredicted RBP29.64■■■□□ 2.34
CLN3-262ENST00000637699 SHPRHQ149N8 1683 aa29.61■■■□□ 2.33
CLN3-262ENST00000637699 NUTM2BA6NNL0 878 aaPredicted RBP29.61■■■□□ 2.33
CLN3-262ENST00000637699 NUTM2EB1AL46 878 aaPredicted RBP29.61■■■□□ 2.33
CLN3-262ENST00000637699 NUTM2AQ8IVF1 878 aaPredicted RBP29.61■■■□□ 2.33
CLN3-262ENST00000637699 NRXN3Q9Y4C0 1643 aa29.6■■■□□ 2.33
CLN3-262ENST00000637699 TRIM52Q96A61 297 aa29.6■■■□□ 2.33
CLN3-262ENST00000637699 SPHKAPQ2M3C7 1700 aa29.59■■■□□ 2.33
CLN3-262ENST00000637699 SETBP1Q9Y6X0 1596 aa29.59■■■□□ 2.33
CLN3-262ENST00000637699 METP08581 1390 aa29.58■■■□□ 2.33
CLN3-262ENST00000637699 DCCP43146 1447 aa29.58■■■□□ 2.33
CLN3-262ENST00000637699 XRN1Q8IZH2 1706 aaKnown RBP29.57■■■□□ 2.32
CLN3-262ENST00000637699 ASXL1Q8IXJ9 1541 aa29.55■■■□□ 2.32
CLN3-262ENST00000637699 MST1RQ04912 1400 aa29.54■■■□□ 2.32
CLN3-262ENST00000637699 RXRBP28702 533 aa29.51■■■□□ 2.31
CLN3-262ENST00000637699 DDX17Q92841 729 aaKnown RBP29.5■■■□□ 2.31
CLN3-262ENST00000637699 UPF1Q92900 1129 aaKnown RBP eCLIP29.5■■■□□ 2.31
CLN3-262ENST00000637699 SETD5Q9C0A6 1442 aa29.49■■■□□ 2.31
CLN3-262ENST00000637699 LRRC59Q96AG4 307 aaKnown RBP29.48■■■□□ 2.31
CLN3-262ENST00000637699 CLTCL1P53675 1640 aa29.48■■■□□ 2.31
CLN3-262ENST00000637699 AFF2P51816 1311 aa29.47■■■□□ 2.31
CLN3-262ENST00000637699 ADGRL3Q9HAR2 1447 aa29.46■■■□□ 2.31
CLN3-262ENST00000637699 NEXMIFQ5QGS0 1516 aa29.46■■■□□ 2.31
CLN3-262ENST00000637699 NHSL1Q5SYE7 1610 aa29.45■■■□□ 2.31
CLN3-262ENST00000637699 NALCNQ8IZF0 1738 aa29.4■■■□□ 2.3
CLN3-262ENST00000637699 C8orf37Q96NL8 207 aa29.4■■■□□ 2.3
CLN3-262ENST00000637699 KIF1BO60333 1816 aa29.4■■■□□ 2.3
CLN3-262ENST00000637699 NAIPQ13075 1403 aa29.39■■■□□ 2.3
CLN3-262ENST00000637699 PNPLA6Q8IY17 1366 aa29.39■■■□□ 2.29
CLN3-262ENST00000637699 VGFO15240 615 aaPredicted RBP29.37■■■□□ 2.29
CLN3-262ENST00000637699 CDK12Q9NYV4 1490 aaPredicted RBP29.36■■■□□ 2.29
CLN3-262ENST00000637699 C1orf167Q5SNV9 1468 aa29.36■■■□□ 2.29
CLN3-262ENST00000637699 QTRT2Q9H974 415 aaKnown RBP29.35■■■□□ 2.29
CLN3-262ENST00000637699 RRBP1Q9P2E9 1410 aaKnown RBP29.34■■■□□ 2.29
CLN3-262ENST00000637699 ADAMTS2O95450 1211 aa29.33■■■□□ 2.29
CLN3-262ENST00000637699 ROBO2Q9HCK4 1378 aa29.33■■■□□ 2.29
CLN3-262ENST00000637699 ORAI2Q96SN7 254 aa29.32■■■□□ 2.28
CLN3-262ENST00000637699 NGLY1Q96IV0 654 aa29.31■■■□□ 2.28
CLN3-262ENST00000637699 PTCH1Q13635 1447 aa29.3■■■□□ 2.28
CLN3-262ENST00000637699 RBM6P78332 1123 aaKnown RBP29.3■■■□□ 2.28
CLN3-262ENST00000637699 SLC4A1APQ9BWU0 796 aaKnown RBP29.28■■■□□ 2.28
CLN3-262ENST00000637699 RPGRIP1LQ68CZ1 1315 aa29.27■■■□□ 2.28
CLN3-262ENST00000637699 RGS12O14924 1447 aa29.27■■■□□ 2.28
CLN3-262ENST00000637699 SOS2Q07890 1332 aaPredicted RBP29.26■■■□□ 2.27
CLN3-262ENST00000637699 LAMC1P11047 1609 aa29.22■■■□□ 2.27
CLN3-262ENST00000637699 HFM1A2PYH4 1435 aa29.21■■■□□ 2.27
CLN3-262ENST00000637699 FOXD1Q16676 465 aa29.19■■■□□ 2.26
CLN3-262ENST00000637699 USP21Q9UK80 565 aa29.19■■■□□ 2.26
CLN3-262ENST00000637699 PRAG1Q86YV5 1406 aa29.19■■■□□ 2.26
CLN3-262ENST00000637699 PPLO60437 1756 aa29.18■■■□□ 2.26
CLN3-262ENST00000637699 ESCO1Q5FWF5 840 aa29.17■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms