RNA–Protein interactions for RNA: ENST00000637494.1

CLN6-221, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5 BASIC

Gene CLN6, Length 765 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-221ENST00000637494 RIMS2Q9UQ26 1411 aa28.6■■■□□ 2.17
CLN6-221ENST00000637494 NAIPQ13075 1403 aa28.58■■■□□ 2.17
CLN6-221ENST00000637494 MYO5BQ9ULV0 1848 aa28.57■■■□□ 2.16
CLN6-221ENST00000637494 ZFYVE9O95405 1425 aa28.56■■■□□ 2.16
CLN6-221ENST00000637494 KCNA6P17658 529 aa28.56■■■□□ 2.16
CLN6-221ENST00000637494 PLEKHG1Q9ULL1 1385 aa28.55■■■□□ 2.16
CLN6-221ENST00000637494 DISP3Q9P2K9 1392 aa28.54■■■□□ 2.16
CLN6-221ENST00000637494 TRIM52Q96A61 297 aa28.53■■■□□ 2.16
CLN6-221ENST00000637494 HFM1A2PYH4 1435 aa28.52■■■□□ 2.16
CLN6-221ENST00000637494 SPHKAPQ2M3C7 1700 aa28.51■■■□□ 2.15
CLN6-221ENST00000637494 PROSER2Q86WR7 435 aaPredicted RBP28.5■■■□□ 2.15
CLN6-221ENST00000637494 SENP3Q9H4L4 574 aaPredicted RBP28.5■■■□□ 2.15
CLN6-221ENST00000637494 HSPA1LP34931 641 aa28.48■■■□□ 2.15
CLN6-221ENST00000637494 NKTRP30414 1462 aaKnown RBP28.46■■■□□ 2.15
CLN6-221ENST00000637494 ZNF326Q5BKZ1 582 aaKnown RBP28.45■■■□□ 2.14
CLN6-221ENST00000637494 NUTM2DQ5VT03 806 aaPredicted RBP28.45■■■□□ 2.14
CLN6-221ENST00000637494 TBX22Q9Y458 520 aa28.45■■■□□ 2.14
CLN6-221ENST00000637494 TMEM94Q12767 1356 aa28.45■■■□□ 2.14
CLN6-221ENST00000637494 ALKQ9UM73 1620 aa28.43■■■□□ 2.14
CLN6-221ENST00000637494 NWD1Q149M9 1564 aa28.43■■■□□ 2.14
CLN6-221ENST00000637494 XIRP1Q702N8 1843 aaKnown RBP28.41■■■□□ 2.14
CLN6-221ENST00000637494 DIP2AQ14689 1571 aa28.41■■■□□ 2.14
CLN6-221ENST00000637494 SLC4A1APQ9BWU0 796 aaKnown RBP28.4■■■□□ 2.14
CLN6-221ENST00000637494 TRPM2O94759 1503 aa28.39■■■□□ 2.14
CLN6-221ENST00000637494 CHD2O14647 1828 aaKnown RBP28.36■■■□□ 2.13
CLN6-221ENST00000637494 MSH6P52701 1360 aa28.36■■■□□ 2.13
CLN6-221ENST00000637494 PIK3R4Q99570 1358 aa28.36■■■□□ 2.13
CLN6-221ENST00000637494 ADAMTS13Q76LX8 1427 aa28.35■■■□□ 2.13
CLN6-221ENST00000637494 CLTCL1P53675 1640 aa28.34■■■□□ 2.13
CLN6-221ENST00000637494 RBM33Q96EV2 1170 aaKnown RBP28.34■■■□□ 2.13
CLN6-221ENST00000637494 KIF1BO60333 1816 aa28.32■■■□□ 2.12
CLN6-221ENST00000637494 C14orf37Q86TY3 774 aa28.31■■■□□ 2.12
CLN6-221ENST00000637494 ACIN1Q9UKV3 1341 aaKnown RBP28.3■■■□□ 2.12
CLN6-221ENST00000637494 FAM135BQ49AJ0 1406 aa28.28■■■□□ 2.12
CLN6-221ENST00000637494 NCOA3Q9Y6Q9 1424 aa28.28■■■□□ 2.12
CLN6-221ENST00000637494 SETBP1Q9Y6X0 1596 aa28.25■■■□□ 2.11
CLN6-221ENST00000637494 AMOTL2Q9Y2J4 779 aa28.25■■■□□ 2.11
CLN6-221ENST00000637494 NEXMIFQ5QGS0 1516 aa28.23■■■□□ 2.11
CLN6-221ENST00000637494 MED1Q15648 1581 aaPredicted RBP28.23■■■□□ 2.11
CLN6-221ENST00000637494 VGFO15240 615 aaPredicted RBP28.22■■■□□ 2.11
CLN6-221ENST00000637494 RPGRIP1LQ68CZ1 1315 aa28.21■■■□□ 2.11
CLN6-221ENST00000637494 ILDR2Q71H61 639 aa28.21■■■□□ 2.11
CLN6-221ENST00000637494 SLAIN2Q9P270 581 aa28.21■■■□□ 2.11
CLN6-221ENST00000637494 NRXN3Q9Y4C0 1643 aa28.2■■■□□ 2.1
CLN6-221ENST00000637494 ROBO1Q9Y6N7 1651 aa28.19■■■□□ 2.1
CLN6-221ENST00000637494 MPHOSPH9Q99550 1183 aa28.19■■■□□ 2.1
CLN6-221ENST00000637494 ATF3P18847 181 aa28.18■■■□□ 2.1
CLN6-221ENST00000637494 PHF23Q9BUL5 403 aaPredicted RBP28.18■■■□□ 2.1
CLN6-221ENST00000637494 C19orf44Q9H6X5 657 aa28.18■■■□□ 2.1
CLN6-221ENST00000637494 FOXD1Q16676 465 aa28.17■■■□□ 2.1
CLN6-221ENST00000637494 CADPS2Q86UW7 1296 aa28.17■■■□□ 2.1
CLN6-221ENST00000637494 CCDC144AA2RUR9 1427 aa28.17■■■□□ 2.1
CLN6-221ENST00000637494 PTPRUQ92729 1446 aa28.17■■■□□ 2.1
CLN6-221ENST00000637494 SETD5Q9C0A6 1442 aa28.17■■■□□ 2.1
CLN6-221ENST00000637494 METP08581 1390 aa28.12■■■□□ 2.09
CLN6-221ENST00000637494 XRN1Q8IZH2 1706 aaKnown RBP28.12■■■□□ 2.09
CLN6-221ENST00000637494 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.11■■■□□ 2.09
CLN6-221ENST00000637494 SOCS7O14512 581 aa28.07■■■□□ 2.08
CLN6-221ENST00000637494 PPLO60437 1756 aa28.06■■■□□ 2.08
CLN6-221ENST00000637494 DCCP43146 1447 aa28.06■■■□□ 2.08
CLN6-221ENST00000637494 RGL3Q3MIN7 710 aa28.05■■■□□ 2.08
CLN6-221ENST00000637494 PHLPP1O60346 1717 aa28.04■■■□□ 2.08
CLN6-221ENST00000637494 RAB3GAP2Q9H2M9 1393 aa28.03■■■□□ 2.08
CLN6-221ENST00000637494 ANKRD30BQ9BXX2 1392 aa28.01■■■□□ 2.07
CLN6-221ENST00000637494 SPATA31E1Q6ZUB1 1445 aa27.99■■■□□ 2.07
CLN6-221ENST00000637494 ADGRL3Q9HAR2 1447 aa27.98■■■□□ 2.07
CLN6-221ENST00000637494 JCADQ9P266 1359 aa27.98■■■□□ 2.07
CLN6-221ENST00000637494 PTCH1Q13635 1447 aa27.97■■■□□ 2.07
CLN6-221ENST00000637494 SETD1AO15047 1707 aaKnown RBP27.96■■■□□ 2.07
CLN6-221ENST00000637494 ADGRF5Q8IZF2 1346 aa27.94■■■□□ 2.06
CLN6-221ENST00000637494 BRINP3Q76B58 766 aa27.93■■■□□ 2.06
CLN6-221ENST00000637494 AHDC1Q5TGY3 1603 aaPredicted RBP27.92■■■□□ 2.06
CLN6-221ENST00000637494 COL16A1Q07092 1604 aaPredicted RBP27.92■■■□□ 2.06
CLN6-221ENST00000637494 MST1RQ04912 1400 aa27.92■■■□□ 2.06
CLN6-221ENST00000637494 NALCNQ8IZF0 1738 aa27.91■■■□□ 2.06
CLN6-221ENST00000637494 IFT172Q9UG01 1749 aa27.91■■■□□ 2.06
CLN6-221ENST00000637494 ROBO2Q9HCK4 1378 aa27.9■■■□□ 2.06
CLN6-221ENST00000637494 PRAG1Q86YV5 1406 aa27.9■■■□□ 2.06
CLN6-221ENST00000637494 HRCP23327 699 aa27.89■■■□□ 2.06
CLN6-221ENST00000637494 ASXL1Q8IXJ9 1541 aa27.87■■■□□ 2.05
CLN6-221ENST00000637494 SPATA31A6Q5VVP1 1343 aa27.86■■■□□ 2.05
CLN6-221ENST00000637494 PIK3C2GO75747 1445 aa27.84■■■□□ 2.05
CLN6-221ENST00000637494 STK26Q9P289 416 aa27.84■■■□□ 2.05
CLN6-221ENST00000637494 MEX3CQ5U5Q3 659 aaKnown RBP27.82■■■□□ 2.04
CLN6-221ENST00000637494 LRPPRCP42704 1394 aaKnown RBP27.81■■■□□ 2.04
CLN6-221ENST00000637494 C1orf167Q5SNV9 1468 aa27.81■■■□□ 2.04
CLN6-221ENST00000637494 SHPRHQ149N8 1683 aa27.79■■■□□ 2.04
CLN6-221ENST00000637494 MYOM2P54296 1465 aa27.79■■■□□ 2.04
CLN6-221ENST00000637494 TMEM132EQ6IEE7 984 aa27.79■■■□□ 2.04
CLN6-221ENST00000637494 LRRC59Q96AG4 307 aaKnown RBP27.79■■■□□ 2.04
CLN6-221ENST00000637494 RGS17Q9UGC6 210 aaPredicted RBP27.79■■■□□ 2.04
CLN6-221ENST00000637494 NHSL1Q5SYE7 1610 aa27.78■■■□□ 2.04
CLN6-221ENST00000637494 TECPR2O15040 1411 aa27.78■■■□□ 2.04
CLN6-221ENST00000637494 ABCC11Q96J66 1382 aa27.77■■■□□ 2.04
CLN6-221ENST00000637494 C14orf93Q9H972 538 aaKnown RBP27.76■■■□□ 2.03
CLN6-221ENST00000637494 LAMC1P11047 1609 aa27.76■■■□□ 2.03
CLN6-221ENST00000637494 KNDC1Q76NI1 1749 aa27.75■■■□□ 2.03
CLN6-221ENST00000637494 YTHDC2Q9H6S0 1430 aaKnown RBP27.75■■■□□ 2.03
CLN6-221ENST00000637494 DHX57Q6P158 1386 aaKnown RBP27.74■■■□□ 2.03
CLN6-221ENST00000637494 NRXN1Q9ULB1 1477 aa27.74■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms