RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 RIMS2Q9UQ26 1411 aa18.92■□□□□ 0.62
PNKP-217ENST00000625216 E9PCH4 1651 aa18.92■□□□□ 0.62
PNKP-217ENST00000625216 PPP1R15AO75807 674 aaPredicted RBP18.92■□□□□ 0.62
PNKP-217ENST00000625216 PLEKHG1Q9ULL1 1385 aa18.91■□□□□ 0.62
PNKP-217ENST00000625216 TRIM52Q96A61 297 aa18.9■□□□□ 0.62
PNKP-217ENST00000625216 TMEM131LA2VDJ0 1609 aa18.89■□□□□ 0.62
PNKP-217ENST00000625216 PIP4K2BP78356 416 aa18.89■□□□□ 0.61
PNKP-217ENST00000625216 TBX22Q9Y458 520 aa18.89■□□□□ 0.61
PNKP-217ENST00000625216 SCAF1Q9H7N4 1312 aaKnown RBP18.88■□□□□ 0.61
PNKP-217ENST00000625216 PROSER2Q86WR7 435 aaPredicted RBP18.85■□□□□ 0.61
PNKP-217ENST00000625216 SLC4A1APQ9BWU0 796 aaKnown RBP18.85■□□□□ 0.61
PNKP-217ENST00000625216 STRCP1A6NGW2 1772 aa18.84■□□□□ 0.61
PNKP-217ENST00000625216 ACIN1Q9UKV3 1341 aaKnown RBP18.84■□□□□ 0.61
PNKP-217ENST00000625216 TMEM94Q12767 1356 aa18.82■□□□□ 0.6
PNKP-217ENST00000625216 HSPA1LP34931 641 aa18.81■□□□□ 0.6
PNKP-217ENST00000625216 ZNF326Q5BKZ1 582 aaKnown RBP18.81■□□□□ 0.6
PNKP-217ENST00000625216 NUTM2DQ5VT03 806 aaPredicted RBP18.81■□□□□ 0.6
PNKP-217ENST00000625216 PIK3R4Q99570 1358 aa18.81■□□□□ 0.6
PNKP-217ENST00000625216 NKTRP30414 1462 aaKnown RBP18.8■□□□□ 0.6
PNKP-217ENST00000625216 SENP3Q9H4L4 574 aaPredicted RBP18.79■□□□□ 0.6
PNKP-217ENST00000625216 ADAMTS13Q76LX8 1427 aa18.78■□□□□ 0.6
PNKP-217ENST00000625216 TRPM2O94759 1503 aa18.78■□□□□ 0.6
PNKP-217ENST00000625216 SPHKAPQ2M3C7 1700 aa18.77■□□□□ 0.6
PNKP-217ENST00000625216 DISP3Q9P2K9 1392 aa18.77■□□□□ 0.6
PNKP-217ENST00000625216 ALKQ9UM73 1620 aa18.77■□□□□ 0.6
PNKP-217ENST00000625216 MYO5BQ9ULV0 1848 aa18.77■□□□□ 0.59
PNKP-217ENST00000625216 NWD1Q149M9 1564 aa18.76■□□□□ 0.59
PNKP-217ENST00000625216 NCOA3Q9Y6Q9 1424 aa18.75■□□□□ 0.59
PNKP-217ENST00000625216 DIP2AQ14689 1571 aa18.75■□□□□ 0.59
PNKP-217ENST00000625216 MPHOSPH9Q99550 1183 aa18.74■□□□□ 0.59
PNKP-217ENST00000625216 RPGRIP1LQ68CZ1 1315 aa18.74■□□□□ 0.59
PNKP-217ENST00000625216 MSH6P52701 1360 aa18.73■□□□□ 0.59
PNKP-217ENST00000625216 VGFO15240 615 aaPredicted RBP18.73■□□□□ 0.59
PNKP-217ENST00000625216 RBM33Q96EV2 1170 aaKnown RBP18.73■□□□□ 0.59
PNKP-217ENST00000625216 FAM135BQ49AJ0 1406 aa18.73■□□□□ 0.59
PNKP-217ENST00000625216 AMOTL2Q9Y2J4 779 aa18.72■□□□□ 0.59
PNKP-217ENST00000625216 SETD5Q9C0A6 1442 aa18.71■□□□□ 0.59
PNKP-217ENST00000625216 CLTCL1P53675 1640 aa18.71■□□□□ 0.58
PNKP-217ENST00000625216 C19orf44Q9H6X5 657 aa18.69■□□□□ 0.58
PNKP-217ENST00000625216 CHD2O14647 1828 aaKnown RBP18.69■□□□□ 0.58
PNKP-217ENST00000625216 SETBP1Q9Y6X0 1596 aa18.68■□□□□ 0.58
PNKP-217ENST00000625216 XIRP1Q702N8 1843 aaKnown RBP18.68■□□□□ 0.58
PNKP-217ENST00000625216 FOXD1Q16676 465 aa18.68■□□□□ 0.58
PNKP-217ENST00000625216 C14orf37Q86TY3 774 aa18.68■□□□□ 0.58
PNKP-217ENST00000625216 SLAIN2Q9P270 581 aa18.68■□□□□ 0.58
PNKP-217ENST00000625216 NEXMIFQ5QGS0 1516 aa18.66■□□□□ 0.58
PNKP-217ENST00000625216 CADPS2Q86UW7 1296 aa18.66■□□□□ 0.58
PNKP-217ENST00000625216 CCDC144AA2RUR9 1427 aa18.66■□□□□ 0.58
PNKP-217ENST00000625216 PTPRUQ92729 1446 aa18.66■□□□□ 0.58
PNKP-217ENST00000625216 METP08581 1390 aa18.64■□□□□ 0.57
PNKP-217ENST00000625216 KIF1BO60333 1816 aa18.63■□□□□ 0.57
PNKP-217ENST00000625216 ATF3P18847 181 aa18.63■□□□□ 0.57
PNKP-217ENST00000625216 HRCP23327 699 aa18.63■□□□□ 0.57
PNKP-217ENST00000625216 NRXN3Q9Y4C0 1643 aa18.61■□□□□ 0.57
PNKP-217ENST00000625216 RAB3GAP2Q9H2M9 1393 aa18.61■□□□□ 0.57
PNKP-217ENST00000625216 ILDR2Q71H61 639 aa18.6■□□□□ 0.57
PNKP-217ENST00000625216 RGL3Q3MIN7 710 aa18.59■□□□□ 0.57
PNKP-217ENST00000625216 ANKRD30BQ9BXX2 1392 aa18.58■□□□□ 0.57
PNKP-217ENST00000625216 SPATA31E1Q6ZUB1 1445 aa18.57■□□□□ 0.56
PNKP-217ENST00000625216 DCCP43146 1447 aa18.57■□□□□ 0.56
PNKP-217ENST00000625216 MED1Q15648 1581 aaPredicted RBP18.55■□□□□ 0.56
PNKP-217ENST00000625216 XRN1Q8IZH2 1706 aaKnown RBP18.54■□□□□ 0.56
PNKP-217ENST00000625216 ADGRF5Q8IZF2 1346 aa18.54■□□□□ 0.56
PNKP-217ENST00000625216 ROBO1Q9Y6N7 1651 aa18.54■□□□□ 0.56
PNKP-217ENST00000625216 PHF23Q9BUL5 403 aaPredicted RBP18.54■□□□□ 0.56
PNKP-217ENST00000625216 PTCH1Q13635 1447 aa18.52■□□□□ 0.56
PNKP-217ENST00000625216 PRAG1Q86YV5 1406 aa18.52■□□□□ 0.56
PNKP-217ENST00000625216 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.51■□□□□ 0.55
PNKP-217ENST00000625216 ADGRL3Q9HAR2 1447 aa18.5■□□□□ 0.55
PNKP-217ENST00000625216 SOCS7O14512 581 aa18.5■□□□□ 0.55
PNKP-217ENST00000625216 BRINP3Q76B58 766 aa18.5■□□□□ 0.55
PNKP-217ENST00000625216 ROBO2Q9HCK4 1378 aa18.49■□□□□ 0.55
PNKP-217ENST00000625216 JCADQ9P266 1359 aa18.49■□□□□ 0.55
PNKP-217ENST00000625216 PPLO60437 1756 aa18.49■□□□□ 0.55
PNKP-217ENST00000625216 C14orf93Q9H972 538 aaKnown RBP18.46■□□□□ 0.55
PNKP-217ENST00000625216 MST1RQ04912 1400 aa18.46■□□□□ 0.55
PNKP-217ENST00000625216 STAC3Q96MF2 364 aa18.45■□□□□ 0.54
PNKP-217ENST00000625216 PIK3C2GO75747 1445 aa18.45■□□□□ 0.54
PNKP-217ENST00000625216 LRPPRCP42704 1394 aaKnown RBP18.44■□□□□ 0.54
PNKP-217ENST00000625216 DHX57Q6P158 1386 aaKnown RBP18.44■□□□□ 0.54
PNKP-217ENST00000625216 ABCC11Q96J66 1382 aa18.44■□□□□ 0.54
PNKP-217ENST00000625216 SETD1AO15047 1707 aaKnown RBP18.44■□□□□ 0.54
PNKP-217ENST00000625216 SIRT1Q96EB6 747 aa18.43■□□□□ 0.54
PNKP-217ENST00000625216 STK26Q9P289 416 aa18.43■□□□□ 0.54
PNKP-217ENST00000625216 SPATA31A6Q5VVP1 1343 aa18.43■□□□□ 0.54
PNKP-217ENST00000625216 AHDC1Q5TGY3 1603 aaPredicted RBP18.42■□□□□ 0.54
PNKP-217ENST00000625216 TECPR2O15040 1411 aa18.42■□□□□ 0.54
PNKP-217ENST00000625216 TMEM132EQ6IEE7 984 aa18.42■□□□□ 0.54
PNKP-217ENST00000625216 PHLPP1O60346 1717 aa18.42■□□□□ 0.54
PNKP-217ENST00000625216 MYOM2P54296 1465 aa18.4■□□□□ 0.54
PNKP-217ENST00000625216 NRXN1Q9ULB1 1477 aa18.4■□□□□ 0.54
PNKP-217ENST00000625216 LRRC59Q96AG4 307 aaKnown RBP18.4■□□□□ 0.54
PNKP-217ENST00000625216 C1orf167Q5SNV9 1468 aa18.39■□□□□ 0.54
PNKP-217ENST00000625216 ASXL1Q8IXJ9 1541 aa18.39■□□□□ 0.54
PNKP-217ENST00000625216 COL16A1Q07092 1604 aaPredicted RBP18.39■□□□□ 0.53
PNKP-217ENST00000625216 CFAP70Q5T0N1 1121 aa18.39■□□□□ 0.53
PNKP-217ENST00000625216 CCER1Q8TC90 406 aaPredicted RBP18.39■□□□□ 0.53
PNKP-217ENST00000625216 RGS17Q9UGC6 210 aaPredicted RBP18.39■□□□□ 0.53
PNKP-217ENST00000625216 IFT172Q9UG01 1749 aa18.39■□□□□ 0.53
PNKP-217ENST00000625216 WAPLQ7Z5K2 1190 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 131.8 ms