RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 BCANQ96GW7 911 aa38.4■■■■□ 3.74
PTPRF-216ENST00000617451 ROCK1Q13464 1354 aa38.4■■■■□ 3.74
PTPRF-216ENST00000617451 GCC2Q8IWJ2 1684 aa38.37■■■■□ 3.73
PTPRF-216ENST00000617451 NWD1Q149M9 1564 aa38.37■■■■□ 3.73
PTPRF-216ENST00000617451 NKTRP30414 1462 aaKnown RBP38.37■■■■□ 3.73
PTPRF-216ENST00000617451 RBM33Q96EV2 1170 aaKnown RBP38.37■■■■□ 3.73
PTPRF-216ENST00000617451 PLEKHG1Q9ULL1 1385 aa38.36■■■■□ 3.73
PTPRF-216ENST00000617451 RIMS2Q9UQ26 1411 aa38.36■■■■□ 3.73
PTPRF-216ENST00000617451 TMEM131LA2VDJ0 1609 aa38.35■■■■□ 3.73
PTPRF-216ENST00000617451 HDGFP51858 240 aaKnown RBP38.35■■■■□ 3.73
PTPRF-216ENST00000617451 MYO5BQ9ULV0 1848 aa38.34■■■■□ 3.73
PTPRF-216ENST00000617451 PPP1R15AO75807 674 aaPredicted RBP38.31■■■■□ 3.72
PTPRF-216ENST00000617451 E9PCH4 1651 aa38.29■■■■□ 3.72
PTPRF-216ENST00000617451 CHGAP10645 457 aaKnown RBP38.26■■■■□ 3.72
PTPRF-216ENST00000617451 ABCF1Q8NE71 845 aaKnown RBP eCLIP38.26■■■■□ 3.72
PTPRF-216ENST00000617451 IQGAP3Q86VI3 1631 aa38.26■■■■□ 3.71
PTPRF-216ENST00000617451 TBX22Q9Y458 520 aa38.25■■■■□ 3.71
PTPRF-216ENST00000617451 MSH6P52701 1360 aa38.24■■■■□ 3.71
PTPRF-216ENST00000617451 ROBO1Q9Y6N7 1651 aa38.23■■■■□ 3.71
PTPRF-216ENST00000617451 NUP155O75694 1391 aa38.23■■■■□ 3.71
PTPRF-216ENST00000617451 CHD2O14647 1828 aaKnown RBP38.23■■■■□ 3.71
PTPRF-216ENST00000617451 ITGAEP38570 1179 aa38.22■■■■□ 3.71
PTPRF-216ENST00000617451 RGS17Q9UGC6 210 aaPredicted RBP38.2■■■■□ 3.71
PTPRF-216ENST00000617451 SLAIN2Q9P270 581 aa38.18■■■■□ 3.7
PTPRF-216ENST00000617451 NUTM2DQ5VT03 806 aaPredicted RBP38.17■■■■□ 3.7
PTPRF-216ENST00000617451 ADAMTS13Q76LX8 1427 aa38.15■■■■□ 3.7
PTPRF-216ENST00000617451 PPARGC1BQ86YN6 1023 aaKnown RBP38.15■■■■□ 3.7
PTPRF-216ENST00000617451 NCOA3Q9Y6Q9 1424 aa38.12■■■■□ 3.69
PTPRF-216ENST00000617451 PIK3R4Q99570 1358 aa38.09■■■■□ 3.69
PTPRF-216ENST00000617451 DIP2AQ14689 1571 aa38.09■■■■□ 3.69
PTPRF-216ENST00000617451 C14orf37Q86TY3 774 aa38.01■■■■□ 3.68
PTPRF-216ENST00000617451 PHLPP1O60346 1717 aa38■■■■□ 3.67
PTPRF-216ENST00000617451 C19orf44Q9H6X5 657 aa37.99■■■■□ 3.67
PTPRF-216ENST00000617451 TRPM2O94759 1503 aa37.97■■■■□ 3.67
PTPRF-216ENST00000617451 AMOTL2Q9Y2J4 779 aa37.97■■■■□ 3.67
PTPRF-216ENST00000617451 JCADQ9P266 1359 aa37.96■■■■□ 3.67
PTPRF-216ENST00000617451 CADPS2Q86UW7 1296 aa37.96■■■■□ 3.67
PTPRF-216ENST00000617451 PTPRUQ92729 1446 aa37.95■■■■□ 3.67
PTPRF-216ENST00000617451 POTEAQ6S8J7 498 aa37.95■■■■□ 3.67
PTPRF-216ENST00000617451 SPHKAPQ2M3C7 1700 aa37.95■■■■□ 3.67
PTPRF-216ENST00000617451 SIPA1L2Q9P2F8 1722 aaPredicted RBP37.93■■■■□ 3.66
PTPRF-216ENST00000617451 ATF3P18847 181 aa37.93■■■■□ 3.66
PTPRF-216ENST00000617451 RRBP1Q9P2E9 1410 aaKnown RBP37.9■■■■□ 3.66
PTPRF-216ENST00000617451 COL16A1Q07092 1604 aaPredicted RBP37.9■■■■□ 3.66
PTPRF-216ENST00000617451 SETBP1Q9Y6X0 1596 aa37.89■■■■□ 3.66
PTPRF-216ENST00000617451 NRXN3Q9Y4C0 1643 aa37.88■■■■□ 3.65
PTPRF-216ENST00000617451 ZNF326Q5BKZ1 582 aaKnown RBP37.88■■■■□ 3.65
PTPRF-216ENST00000617451 NAIPQ13075 1403 aa37.84■■■■□ 3.65
PTPRF-216ENST00000617451 XRN1Q8IZH2 1706 aaKnown RBP37.81■■■■□ 3.64
PTPRF-216ENST00000617451 AHDC1Q5TGY3 1603 aaPredicted RBP37.81■■■■□ 3.64
PTPRF-216ENST00000617451 METP08581 1390 aa37.8■■■■□ 3.64
PTPRF-216ENST00000617451 CLTCL1P53675 1640 aa37.79■■■■□ 3.64
PTPRF-216ENST00000617451 DCCP43146 1447 aa37.79■■■■□ 3.64
PTPRF-216ENST00000617451 SPATA31A6Q5VVP1 1343 aa37.78■■■■□ 3.64
PTPRF-216ENST00000617451 BRINP3Q76B58 766 aa37.77■■■■□ 3.64
PTPRF-216ENST00000617451 NEXMIFQ5QGS0 1516 aa37.76■■■■□ 3.63
PTPRF-216ENST00000617451 LRP6O75581 1613 aa37.72■■■■□ 3.63
PTPRF-216ENST00000617451 SHPRHQ149N8 1683 aa37.68■■■■□ 3.62
PTPRF-216ENST00000617451 MST1RQ04912 1400 aa37.68■■■■□ 3.62
PTPRF-216ENST00000617451 KIF1BO60333 1816 aa37.67■■■■□ 3.62
PTPRF-216ENST00000617451 HFM1A2PYH4 1435 aa37.67■■■■□ 3.62
PTPRF-216ENST00000617451 TRIM52Q96A61 297 aa37.66■■■■□ 3.62
PTPRF-216ENST00000617451 ASXL1Q8IXJ9 1541 aa37.66■■■■□ 3.62
PTPRF-216ENST00000617451 MEX3CQ5U5Q3 659 aaKnown RBP37.65■■■■□ 3.62
PTPRF-216ENST00000617451 ADGRL3Q9HAR2 1447 aa37.63■■■■□ 3.61
PTPRF-216ENST00000617451 VGFO15240 615 aaPredicted RBP37.6■■■■□ 3.61
PTPRF-216ENST00000617451 ZNF772Q68DY9 489 aaPredicted RBP37.59■■■■□ 3.61
PTPRF-216ENST00000617451 SETD5Q9C0A6 1442 aa37.59■■■■□ 3.61
PTPRF-216ENST00000617451 SLC4A1APQ9BWU0 796 aaKnown RBP37.58■■■■□ 3.61
PTPRF-216ENST00000617451 NHSL1Q5SYE7 1610 aa37.55■■■■□ 3.6
PTPRF-216ENST00000617451 RPGRIP1LQ68CZ1 1315 aa37.55■■■■□ 3.6
PTPRF-216ENST00000617451 SETD1AO15047 1707 aaKnown RBP37.53■■■■□ 3.6
PTPRF-216ENST00000617451 NALCNQ8IZF0 1738 aa37.53■■■■□ 3.6
PTPRF-216ENST00000617451 NUTM2BA6NNL0 878 aaPredicted RBP37.53■■■■□ 3.6
PTPRF-216ENST00000617451 NUTM2EB1AL46 878 aaPredicted RBP37.53■■■■□ 3.6
PTPRF-216ENST00000617451 NUTM2AQ8IVF1 878 aaPredicted RBP37.53■■■■□ 3.6
PTPRF-216ENST00000617451 LRRC59Q96AG4 307 aaKnown RBP37.52■■■■□ 3.6
PTPRF-216ENST00000617451 PTCH1Q13635 1447 aa37.52■■■■□ 3.6
PTPRF-216ENST00000617451 DDX17Q92841 729 aaKnown RBP37.49■■■■□ 3.59
PTPRF-216ENST00000617451 ROBO2Q9HCK4 1378 aa37.48■■■■□ 3.59
PTPRF-216ENST00000617451 PRAG1Q86YV5 1406 aa37.46■■■■□ 3.59
PTPRF-216ENST00000617451 C1orf167Q5SNV9 1468 aa37.45■■■■□ 3.59
PTPRF-216ENST00000617451 PPLO60437 1756 aa37.42■■■■□ 3.58
PTPRF-216ENST00000617451 FOXD1Q16676 465 aa37.41■■■■□ 3.58
PTPRF-216ENST00000617451 PNPLA6Q8IY17 1366 aa37.41■■■■□ 3.58
PTPRF-216ENST00000617451 RXRBP28702 533 aa37.4■■■■□ 3.58
PTPRF-216ENST00000617451 AFF2P51816 1311 aa37.39■■■■□ 3.58
PTPRF-216ENST00000617451 ORAI2Q96SN7 254 aa37.35■■■■□ 3.57
PTPRF-216ENST00000617451 LAMC1P11047 1609 aa37.35■■■■□ 3.57
PTPRF-216ENST00000617451 SOS2Q07890 1332 aaPredicted RBP37.32■■■■□ 3.56
PTPRF-216ENST00000617451 CCDC144AA2RUR9 1427 aa37.31■■■■□ 3.56
PTPRF-216ENST00000617451 C8orf37Q96NL8 207 aa37.31■■■■□ 3.56
PTPRF-216ENST00000617451 CDK12Q9NYV4 1490 aaPredicted RBP37.31■■■■□ 3.56
PTPRF-216ENST00000617451 UPF1Q92900 1129 aaKnown RBP eCLIP37.3■■■■□ 3.56
PTPRF-216ENST00000617451 ADGRF5Q8IZF2 1346 aa37.3■■■■□ 3.56
PTPRF-216ENST00000617451 MPHOSPH9Q99550 1183 aa37.28■■■■□ 3.56
PTPRF-216ENST00000617451 SPATA31E1Q6ZUB1 1445 aa37.27■■■■□ 3.56
PTPRF-216ENST00000617451 RGL3Q3MIN7 710 aa37.26■■■■□ 3.56
PTPRF-216ENST00000617451 ANKRD30BQ9BXX2 1392 aa37.23■■■■□ 3.55
PTPRF-216ENST00000617451 QTRT2Q9H974 415 aaKnown RBP37.23■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms