RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SLC26A8Q96RN1 970 aa28.86■■■□□ 2.21
CCDC28A-203ENST00000617445 DISP3Q9P2K9 1392 aa28.86■■■□□ 2.21
CCDC28A-203ENST00000617445 PLEKHG1Q9ULL1 1385 aa28.86■■■□□ 2.21
CCDC28A-203ENST00000617445 BCANQ96GW7 911 aa28.85■■■□□ 2.21
CCDC28A-203ENST00000617445 PPP1R15AO75807 674 aaPredicted RBP28.84■■■□□ 2.21
CCDC28A-203ENST00000617445 CHGAP10645 457 aaKnown RBP28.84■■■□□ 2.21
CCDC28A-203ENST00000617445 NAIPQ13075 1403 aa28.84■■■□□ 2.21
CCDC28A-203ENST00000617445 ALKQ9UM73 1620 aa28.82■■■□□ 2.2
CCDC28A-203ENST00000617445 HSPA1LP34931 641 aa28.81■■■□□ 2.2
CCDC28A-203ENST00000617445 XIRP1Q702N8 1843 aaKnown RBP28.78■■■□□ 2.2
CCDC28A-203ENST00000617445 HFM1A2PYH4 1435 aa28.77■■■□□ 2.2
CCDC28A-203ENST00000617445 TBX22Q9Y458 520 aa28.77■■■□□ 2.2
CCDC28A-203ENST00000617445 SPHKAPQ2M3C7 1700 aa28.77■■■□□ 2.2
CCDC28A-203ENST00000617445 PROSER2Q86WR7 435 aaPredicted RBP28.76■■■□□ 2.19
CCDC28A-203ENST00000617445 NKTRP30414 1462 aaKnown RBP28.76■■■□□ 2.19
CCDC28A-203ENST00000617445 NWD1Q149M9 1564 aa28.75■■■□□ 2.19
CCDC28A-203ENST00000617445 TMEM94Q12767 1356 aa28.75■■■□□ 2.19
CCDC28A-203ENST00000617445 CHD2O14647 1828 aaKnown RBP28.71■■■□□ 2.19
CCDC28A-203ENST00000617445 PIK3R4Q99570 1358 aa28.69■■■□□ 2.18
CCDC28A-203ENST00000617445 DIP2AQ14689 1571 aa28.69■■■□□ 2.18
CCDC28A-203ENST00000617445 TRIM52Q96A61 297 aa28.68■■■□□ 2.18
CCDC28A-203ENST00000617445 NUTM2DQ5VT03 806 aaPredicted RBP28.66■■■□□ 2.18
CCDC28A-203ENST00000617445 ADAMTS13Q76LX8 1427 aa28.66■■■□□ 2.18
CCDC28A-203ENST00000617445 TRPM2O94759 1503 aa28.65■■■□□ 2.18
CCDC28A-203ENST00000617445 SENP3Q9H4L4 574 aaPredicted RBP28.65■■■□□ 2.18
CCDC28A-203ENST00000617445 FAM135BQ49AJ0 1406 aa28.64■■■□□ 2.18
CCDC28A-203ENST00000617445 NCOA3Q9Y6Q9 1424 aa28.64■■■□□ 2.18
CCDC28A-203ENST00000617445 ZNF326Q5BKZ1 582 aaKnown RBP28.63■■■□□ 2.17
CCDC28A-203ENST00000617445 MSH6P52701 1360 aa28.62■■■□□ 2.17
CCDC28A-203ENST00000617445 SLC4A1APQ9BWU0 796 aaKnown RBP28.61■■■□□ 2.17
CCDC28A-203ENST00000617445 KIF1BO60333 1816 aa28.59■■■□□ 2.17
CCDC28A-203ENST00000617445 CLTCL1P53675 1640 aa28.59■■■□□ 2.17
CCDC28A-203ENST00000617445 ILDR2Q71H61 639 aa28.59■■■□□ 2.17
CCDC28A-203ENST00000617445 RBM33Q96EV2 1170 aaKnown RBP28.59■■■□□ 2.17
CCDC28A-203ENST00000617445 ACIN1Q9UKV3 1341 aaKnown RBP28.57■■■□□ 2.16
CCDC28A-203ENST00000617445 SETBP1Q9Y6X0 1596 aa28.55■■■□□ 2.16
CCDC28A-203ENST00000617445 MED1Q15648 1581 aaPredicted RBP28.54■■■□□ 2.16
CCDC28A-203ENST00000617445 SLAIN2Q9P270 581 aa28.53■■■□□ 2.16
CCDC28A-203ENST00000617445 AMOTL2Q9Y2J4 779 aa28.53■■■□□ 2.16
CCDC28A-203ENST00000617445 NEXMIFQ5QGS0 1516 aa28.51■■■□□ 2.15
CCDC28A-203ENST00000617445 NRXN3Q9Y4C0 1643 aa28.51■■■□□ 2.15
CCDC28A-203ENST00000617445 C14orf37Q86TY3 774 aa28.5■■■□□ 2.15
CCDC28A-203ENST00000617445 C19orf44Q9H6X5 657 aa28.5■■■□□ 2.15
CCDC28A-203ENST00000617445 RPGRIP1LQ68CZ1 1315 aa28.49■■■□□ 2.15
CCDC28A-203ENST00000617445 ROBO1Q9Y6N7 1651 aa28.49■■■□□ 2.15
CCDC28A-203ENST00000617445 VGFO15240 615 aaPredicted RBP28.49■■■□□ 2.15
CCDC28A-203ENST00000617445 PTPRUQ92729 1446 aa28.47■■■□□ 2.15
CCDC28A-203ENST00000617445 SOCS7O14512 581 aa28.47■■■□□ 2.15
CCDC28A-203ENST00000617445 CADPS2Q86UW7 1296 aa28.47■■■□□ 2.15
CCDC28A-203ENST00000617445 ATF3P18847 181 aa28.44■■■□□ 2.14
CCDC28A-203ENST00000617445 MPHOSPH9Q99550 1183 aa28.43■■■□□ 2.14
CCDC28A-203ENST00000617445 PHF23Q9BUL5 403 aaPredicted RBP28.42■■■□□ 2.14
CCDC28A-203ENST00000617445 XRN1Q8IZH2 1706 aaKnown RBP28.42■■■□□ 2.14
CCDC28A-203ENST00000617445 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.41■■■□□ 2.14
CCDC28A-203ENST00000617445 METP08581 1390 aa28.41■■■□□ 2.14
CCDC28A-203ENST00000617445 CCDC144AA2RUR9 1427 aa28.38■■■□□ 2.13
CCDC28A-203ENST00000617445 DCCP43146 1447 aa28.38■■■□□ 2.13
CCDC28A-203ENST00000617445 SETD5Q9C0A6 1442 aa28.38■■■□□ 2.13
CCDC28A-203ENST00000617445 FOXD1Q16676 465 aa28.37■■■□□ 2.13
CCDC28A-203ENST00000617445 PPLO60437 1756 aa28.34■■■□□ 2.13
CCDC28A-203ENST00000617445 PHLPP1O60346 1717 aa28.33■■■□□ 2.13
CCDC28A-203ENST00000617445 JCADQ9P266 1359 aa28.28■■■□□ 2.12
CCDC28A-203ENST00000617445 SETD1AO15047 1707 aaKnown RBP28.28■■■□□ 2.12
CCDC28A-203ENST00000617445 SPATA31E1Q6ZUB1 1445 aa28.27■■■□□ 2.12
CCDC28A-203ENST00000617445 ANKRD30BQ9BXX2 1392 aa28.27■■■□□ 2.12
CCDC28A-203ENST00000617445 PTCH1Q13635 1447 aa28.26■■■□□ 2.12
CCDC28A-203ENST00000617445 PRAG1Q86YV5 1406 aa28.26■■■□□ 2.12
CCDC28A-203ENST00000617445 ADGRL3Q9HAR2 1447 aa28.26■■■□□ 2.12
CCDC28A-203ENST00000617445 AHDC1Q5TGY3 1603 aaPredicted RBP28.25■■■□□ 2.11
CCDC28A-203ENST00000617445 RGL3Q3MIN7 710 aa28.25■■■□□ 2.11
CCDC28A-203ENST00000617445 BRINP3Q76B58 766 aa28.24■■■□□ 2.11
CCDC28A-203ENST00000617445 COL16A1Q07092 1604 aaPredicted RBP28.24■■■□□ 2.11
CCDC28A-203ENST00000617445 RAB3GAP2Q9H2M9 1393 aa28.24■■■□□ 2.11
CCDC28A-203ENST00000617445 MST1RQ04912 1400 aa28.21■■■□□ 2.11
CCDC28A-203ENST00000617445 ADGRF5Q8IZF2 1346 aa28.19■■■□□ 2.1
CCDC28A-203ENST00000617445 HRCP23327 699 aa28.19■■■□□ 2.1
CCDC28A-203ENST00000617445 ROBO2Q9HCK4 1378 aa28.19■■■□□ 2.1
CCDC28A-203ENST00000617445 NALCNQ8IZF0 1738 aa28.18■■■□□ 2.1
CCDC28A-203ENST00000617445 IFT172Q9UG01 1749 aa28.18■■■□□ 2.1
CCDC28A-203ENST00000617445 SPATA31A6Q5VVP1 1343 aa28.18■■■□□ 2.1
CCDC28A-203ENST00000617445 RGS17Q9UGC6 210 aaPredicted RBP28.17■■■□□ 2.1
CCDC28A-203ENST00000617445 ASXL1Q8IXJ9 1541 aa28.16■■■□□ 2.1
CCDC28A-203ENST00000617445 SHPRHQ149N8 1683 aa28.12■■■□□ 2.09
CCDC28A-203ENST00000617445 PIK3C2GO75747 1445 aa28.11■■■□□ 2.09
CCDC28A-203ENST00000617445 NHSL1Q5SYE7 1610 aa28.1■■■□□ 2.09
CCDC28A-203ENST00000617445 LRRC59Q96AG4 307 aaKnown RBP28.09■■■□□ 2.09
CCDC28A-203ENST00000617445 LRPPRCP42704 1394 aaKnown RBP28.09■■■□□ 2.09
CCDC28A-203ENST00000617445 TECPR2O15040 1411 aa28.09■■■□□ 2.09
CCDC28A-203ENST00000617445 C1orf167Q5SNV9 1468 aa28.08■■■□□ 2.09
CCDC28A-203ENST00000617445 ABCC11Q96J66 1382 aa28.08■■■□□ 2.09
CCDC28A-203ENST00000617445 MYOM2P54296 1465 aa28.05■■■□□ 2.08
CCDC28A-203ENST00000617445 C14orf93Q9H972 538 aaKnown RBP28.05■■■□□ 2.08
CCDC28A-203ENST00000617445 NRXN1Q9ULB1 1477 aa28.04■■■□□ 2.08
CCDC28A-203ENST00000617445 STK26Q9P289 416 aa28.04■■■□□ 2.08
CCDC28A-203ENST00000617445 MEX3CQ5U5Q3 659 aaKnown RBP28.03■■■□□ 2.08
CCDC28A-203ENST00000617445 POTEAQ6S8J7 498 aa28.03■■■□□ 2.08
CCDC28A-203ENST00000617445 SIRT1Q96EB6 747 aa28.03■■■□□ 2.08
CCDC28A-203ENST00000617445 KNDC1Q76NI1 1749 aa28.02■■■□□ 2.08
CCDC28A-203ENST00000617445 TMEM132EQ6IEE7 984 aa28.02■■■□□ 2.08
CCDC28A-203ENST00000617445 LAMC1P11047 1609 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms