RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MED14O60244 1454 aa19.97■□□□□ 0.79
LINC00540-202ENST00000616974 HRCP23327 699 aa19.95■□□□□ 0.78
LINC00540-202ENST00000616974 ANKRD30BQ9BXX2 1392 aa19.95■□□□□ 0.78
LINC00540-202ENST00000616974 NEXMIFQ5QGS0 1516 aa19.95■□□□□ 0.78
LINC00540-202ENST00000616974 CCDC144AA2RUR9 1427 aa19.94■□□□□ 0.78
LINC00540-202ENST00000616974 SLC26A8Q96RN1 970 aa19.94■□□□□ 0.78
LINC00540-202ENST00000616974 ZNF326Q5BKZ1 582 aaKnown RBP19.93■□□□□ 0.78
LINC00540-202ENST00000616974 RGL3Q3MIN7 710 aa19.93■□□□□ 0.78
LINC00540-202ENST00000616974 LTBP4Q8N2S1 1624 aa19.92■□□□□ 0.78
LINC00540-202ENST00000616974 PPLO60437 1756 aa19.92■□□□□ 0.78
LINC00540-202ENST00000616974 NRXN3Q9Y4C0 1643 aa19.91■□□□□ 0.78
LINC00540-202ENST00000616974 SPATA31E1Q6ZUB1 1445 aa19.91■□□□□ 0.78
LINC00540-202ENST00000616974 DMRT2Q9Y5R5 561 aa19.9■□□□□ 0.78
LINC00540-202ENST00000616974 EID1Q9Y6B2 187 aa19.9■□□□□ 0.78
LINC00540-202ENST00000616974 IFT172Q9UG01 1749 aa19.89■□□□□ 0.77
LINC00540-202ENST00000616974 DHX57Q6P158 1386 aaKnown RBP19.87■□□□□ 0.77
LINC00540-202ENST00000616974 PPP1R15AO75807 674 aaPredicted RBP19.87■□□□□ 0.77
LINC00540-202ENST00000616974 ADAMTS13Q76LX8 1427 aa19.86■□□□□ 0.77
LINC00540-202ENST00000616974 BCANQ96GW7 911 aa19.85■□□□□ 0.77
LINC00540-202ENST00000616974 PLEKHG1Q9ULL1 1385 aa19.85■□□□□ 0.77
LINC00540-202ENST00000616974 RBM33Q96EV2 1170 aaKnown RBP19.84■□□□□ 0.77
LINC00540-202ENST00000616974 SIN3AQ96ST3 1273 aa19.84■□□□□ 0.77
LINC00540-202ENST00000616974 XIRP1Q702N8 1843 aaKnown RBP19.83■□□□□ 0.76
LINC00540-202ENST00000616974 ADGRF5Q8IZF2 1346 aa19.83■□□□□ 0.76
LINC00540-202ENST00000616974 SETD1AO15047 1707 aaKnown RBP19.82■□□□□ 0.76
LINC00540-202ENST00000616974 CHD2O14647 1828 aaKnown RBP19.81■□□□□ 0.76
LINC00540-202ENST00000616974 ACIN1Q9UKV3 1341 aaKnown RBP19.8■□□□□ 0.76
LINC00540-202ENST00000616974 SETBP1Q9Y6X0 1596 aa19.78■□□□□ 0.76
LINC00540-202ENST00000616974 CERKQ8TCT0 537 aa19.78■□□□□ 0.76
LINC00540-202ENST00000616974 METP08581 1390 aa19.78■□□□□ 0.76
LINC00540-202ENST00000616974 PTPRUQ92729 1446 aa19.78■□□□□ 0.76
LINC00540-202ENST00000616974 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.78■□□□□ 0.76
LINC00540-202ENST00000616974 KDM2AQ9Y2K7 1162 aa19.74■□□□□ 0.75
LINC00540-202ENST00000616974 LRRC7Q96NW7 1537 aa19.74■□□□□ 0.75
LINC00540-202ENST00000616974 ALKQ9UM73 1620 aa19.74■□□□□ 0.75
LINC00540-202ENST00000616974 NEUROD1Q13562 356 aa19.73■□□□□ 0.75
LINC00540-202ENST00000616974 HDGFP51858 240 aaKnown RBP19.73■□□□□ 0.75
LINC00540-202ENST00000616974 KCNA6P17658 529 aa19.72■□□□□ 0.75
LINC00540-202ENST00000616974 NWD1Q149M9 1564 aa19.72■□□□□ 0.75
LINC00540-202ENST00000616974 ASXL1Q8IXJ9 1541 aa19.72■□□□□ 0.75
LINC00540-202ENST00000616974 TBX22Q9Y458 520 aa19.72■□□□□ 0.75
LINC00540-202ENST00000616974 RPGRIP1LQ68CZ1 1315 aa19.71■□□□□ 0.75
LINC00540-202ENST00000616974 DCAF11Q8TEB1 546 aa19.71■□□□□ 0.75
LINC00540-202ENST00000616974 VGFO15240 615 aaPredicted RBP19.7■□□□□ 0.74
LINC00540-202ENST00000616974 PIK3C2GO75747 1445 aa19.7■□□□□ 0.74
LINC00540-202ENST00000616974 DIP2AQ14689 1571 aa19.7■□□□□ 0.74
LINC00540-202ENST00000616974 TMEM132EQ6IEE7 984 aa19.69■□□□□ 0.74
LINC00540-202ENST00000616974 XRN1Q8IZH2 1706 aaKnown RBP19.69■□□□□ 0.74
LINC00540-202ENST00000616974 CPS1P31327 1500 aa19.69■□□□□ 0.74
LINC00540-202ENST00000616974 NRXN1Q9ULB1 1477 aa19.68■□□□□ 0.74
LINC00540-202ENST00000616974 CFAP70Q5T0N1 1121 aa19.67■□□□□ 0.74
LINC00540-202ENST00000616974 AMOTL2Q9Y2J4 779 aa19.67■□□□□ 0.74
LINC00540-202ENST00000616974 TMEM94Q12767 1356 aa19.66■□□□□ 0.74
LINC00540-202ENST00000616974 MYOM2P54296 1465 aa19.66■□□□□ 0.74
LINC00540-202ENST00000616974 ILDR1Q86SU0 546 aaPredicted RBP19.65■□□□□ 0.74
LINC00540-202ENST00000616974 L3MBTL2Q969R5 705 aa19.64■□□□□ 0.74
LINC00540-202ENST00000616974 PROSER2Q86WR7 435 aaPredicted RBP19.63■□□□□ 0.73
LINC00540-202ENST00000616974 NKTRP30414 1462 aaKnown RBP19.62■□□□□ 0.73
LINC00540-202ENST00000616974 STK26Q9P289 416 aa19.61■□□□□ 0.73
LINC00540-202ENST00000616974 ROBO2Q9HCK4 1378 aa19.61■□□□□ 0.73
LINC00540-202ENST00000616974 C14orf93Q9H972 538 aaKnown RBP19.59■□□□□ 0.73
LINC00540-202ENST00000616974 PIK3R4Q99570 1358 aa19.59■□□□□ 0.73
LINC00540-202ENST00000616974 NALCNQ8IZF0 1738 aa19.59■□□□□ 0.73
LINC00540-202ENST00000616974 UBAP1LF5GYI3 381 aa19.58■□□□□ 0.73
LINC00540-202ENST00000616974 ADGRB1O14514 1584 aa19.58■□□□□ 0.73
LINC00540-202ENST00000616974 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.57■□□□□ 0.72
LINC00540-202ENST00000616974 PLEKHH1Q9ULM0 1364 aa19.57■□□□□ 0.72
LINC00540-202ENST00000616974 NBPF1Q3BBV0 1214 aa19.56■□□□□ 0.72
LINC00540-202ENST00000616974 FBXO41Q8TF61 875 aa19.56■□□□□ 0.72
LINC00540-202ENST00000616974 PRAG1Q86YV5 1406 aa19.56■□□□□ 0.72
LINC00540-202ENST00000616974 WAPLQ7Z5K2 1190 aa19.55■□□□□ 0.72
LINC00540-202ENST00000616974 IQSEC2Q5JU85 1478 aa19.55■□□□□ 0.72
LINC00540-202ENST00000616974 PIP4K2BP78356 416 aa19.55■□□□□ 0.72
LINC00540-202ENST00000616974 LAMC1P11047 1609 aa19.55■□□□□ 0.72
LINC00540-202ENST00000616974 YTHDC2Q9H6S0 1430 aaKnown RBP19.54■□□□□ 0.72
LINC00540-202ENST00000616974 NBPF8Q3BBV2 869 aa19.54■□□□□ 0.72
LINC00540-202ENST00000616974 KNDC1Q76NI1 1749 aa19.53■□□□□ 0.72
LINC00540-202ENST00000616974 SCAF1Q9H7N4 1312 aaKnown RBP19.51■□□□□ 0.71
LINC00540-202ENST00000616974 SAFB2Q14151 953 aaKnown RBP eCLIP19.51■□□□□ 0.71
LINC00540-202ENST00000616974 C14orf37Q86TY3 774 aa19.51■□□□□ 0.71
LINC00540-202ENST00000616974 PTCH1Q13635 1447 aa19.5■□□□□ 0.71
LINC00540-202ENST00000616974 LRPPRCP42704 1394 aaKnown RBP19.5■□□□□ 0.71
LINC00540-202ENST00000616974 TRPM1Q7Z4N2 1603 aa19.5■□□□□ 0.71
LINC00540-202ENST00000616974 CCER1Q8TC90 406 aaPredicted RBP19.49■□□□□ 0.71
LINC00540-202ENST00000616974 TRAK1Q9UPV9 953 aa19.49■□□□□ 0.71
LINC00540-202ENST00000616974 ARHGEF28Q8N1W1 1705 aaKnown RBP19.48■□□□□ 0.71
LINC00540-202ENST00000616974 TECPR2O15040 1411 aa19.48■□□□□ 0.71
LINC00540-202ENST00000616974 KIAA1210Q9ULL0 1709 aa19.47■□□□□ 0.71
LINC00540-202ENST00000616974 TONSLQ96HA7 1378 aa19.47■□□□□ 0.71
LINC00540-202ENST00000616974 ABCC11Q96J66 1382 aa19.47■□□□□ 0.71
LINC00540-202ENST00000616974 MSH6P52701 1360 aa19.46■□□□□ 0.71
LINC00540-202ENST00000616974 ROBO1Q9Y6N7 1651 aa19.46■□□□□ 0.71
LINC00540-202ENST00000616974 ADGRL3Q9HAR2 1447 aa19.45■□□□□ 0.7
LINC00540-202ENST00000616974 RGPD8O14715 1765 aaPredicted RBP19.45■□□□□ 0.7
LINC00540-202ENST00000616974 TOM1O60784 492 aa19.44■□□□□ 0.7
LINC00540-202ENST00000616974 PRAM1Q96QH2 718 aa19.44■□□□□ 0.7
LINC00540-202ENST00000616974 C19orf44Q9H6X5 657 aa19.43■□□□□ 0.7
LINC00540-202ENST00000616974 NUTM2FA1L443 756 aa19.43■□□□□ 0.7
LINC00540-202ENST00000616974 HIRIP3Q9BW71 556 aaPredicted RBP19.42■□□□□ 0.7
LINC00540-202ENST00000616974 SLAIN2Q9P270 581 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms