RNA–Protein interactions for RNA: ENST00000612672.1

MMP28-203, Transcript of matrix metallopeptidase 28, humanhuman

TSL 1 (best) BASIC

Gene MMP28, Length 1,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-203ENST00000612672 ZFYVE9O95405 1425 aa36.73■■■■□ 3.47
MMP28-203ENST00000612672 CHD2O14647 1828 aaKnown RBP36.73■■■■□ 3.47
MMP28-203ENST00000612672 APLP2Q06481 763 aa36.72■■■■□ 3.47
MMP28-203ENST00000612672 POTEAQ6S8J7 498 aa36.69■■■■□ 3.46
MMP28-203ENST00000612672 TMEM131LA2VDJ0 1609 aa36.69■■■■□ 3.46
MMP28-203ENST00000612672 RPRD2Q5VT52 1461 aaKnown RBP36.67■■■■□ 3.46
MMP28-203ENST00000612672 PHLPP1O60346 1717 aa36.66■■■■□ 3.46
MMP28-203ENST00000612672 SLC52A1Q9NWF4 448 aa36.65■■■■□ 3.46
MMP28-203ENST00000612672 ANKRD50Q9ULJ7 1429 aa36.64■■■■□ 3.46
MMP28-203ENST00000612672 SETD1AO15047 1707 aaKnown RBP36.62■■■■□ 3.45
MMP28-203ENST00000612672 UNC13BO14795 1591 aa36.61■■■■□ 3.45
MMP28-203ENST00000612672 RIMS2Q9UQ26 1411 aa36.61■■■■□ 3.45
MMP28-203ENST00000612672 PLEKHG1Q9ULL1 1385 aa36.61■■■■□ 3.45
MMP28-203ENST00000612672 MSH6P52701 1360 aa36.59■■■■□ 3.45
MMP28-203ENST00000612672 E9PCH4 1651 aa36.58■■■■□ 3.45
MMP28-203ENST00000612672 COL16A1Q07092 1604 aaPredicted RBP36.58■■■■□ 3.45
MMP28-203ENST00000612672 FAM50AQ14320 339 aaKnown RBP36.57■■■■□ 3.44
MMP28-203ENST00000612672 BCANQ96GW7 911 aa36.56■■■■□ 3.44
MMP28-203ENST00000612672 SLAIN2Q9P270 581 aa36.52■■■■□ 3.44
MMP28-203ENST00000612672 ADAMTS13Q76LX8 1427 aa36.51■■■■□ 3.43
MMP28-203ENST00000612672 SIPA1L2Q9P2F8 1722 aaPredicted RBP36.48■■■■□ 3.43
MMP28-203ENST00000612672 LRP6O75581 1613 aa36.46■■■■□ 3.43
MMP28-203ENST00000612672 JCADQ9P266 1359 aa36.46■■■■□ 3.43
MMP28-203ENST00000612672 IQGAP3Q86VI3 1631 aa36.45■■■■□ 3.43
MMP28-203ENST00000612672 PPP1R15AO75807 674 aaPredicted RBP36.45■■■■□ 3.43
MMP28-203ENST00000612672 NUTM2DQ5VT03 806 aaPredicted RBP36.44■■■■□ 3.42
MMP28-203ENST00000612672 DIP2AQ14689 1571 aa36.42■■■■□ 3.42
MMP28-203ENST00000612672 TBX22Q9Y458 520 aa36.42■■■■□ 3.42
MMP28-203ENST00000612672 CHGAP10645 457 aaKnown RBP36.39■■■■□ 3.42
MMP28-203ENST00000612672 AHDC1Q5TGY3 1603 aaPredicted RBP36.38■■■■□ 3.41
MMP28-203ENST00000612672 NCOA3Q9Y6Q9 1424 aa36.37■■■■□ 3.41
MMP28-203ENST00000612672 PTPRUQ92729 1446 aa36.36■■■■□ 3.41
MMP28-203ENST00000612672 SHPRHQ149N8 1683 aa36.35■■■■□ 3.41
MMP28-203ENST00000612672 NRXN3Q9Y4C0 1643 aa36.34■■■■□ 3.41
MMP28-203ENST00000612672 HDGFP51858 240 aaKnown RBP36.31■■■■□ 3.4
MMP28-203ENST00000612672 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.31■■■■□ 3.4
MMP28-203ENST00000612672 TRPM2O94759 1503 aa36.3■■■■□ 3.4
MMP28-203ENST00000612672 ROCK1Q13464 1354 aa36.29■■■■□ 3.4
MMP28-203ENST00000612672 PIK3R4Q99570 1358 aa36.28■■■■□ 3.4
MMP28-203ENST00000612672 XRN1Q8IZH2 1706 aaKnown RBP36.28■■■■□ 3.4
MMP28-203ENST00000612672 C14orf37Q86TY3 774 aa36.27■■■■□ 3.4
MMP28-203ENST00000612672 SPHKAPQ2M3C7 1700 aa36.23■■■■□ 3.39
MMP28-203ENST00000612672 C19orf44Q9H6X5 657 aa36.23■■■■□ 3.39
MMP28-203ENST00000612672 SPATA31A6Q5VVP1 1343 aa36.22■■■■□ 3.39
MMP28-203ENST00000612672 NUP155O75694 1391 aa36.21■■■■□ 3.39
MMP28-203ENST00000612672 CADPS2Q86UW7 1296 aa36.21■■■■□ 3.39
MMP28-203ENST00000612672 AMOTL2Q9Y2J4 779 aa36.21■■■■□ 3.39
MMP28-203ENST00000612672 SETBP1Q9Y6X0 1596 aa36.2■■■■□ 3.39
MMP28-203ENST00000612672 ATF3P18847 181 aa36.18■■■■□ 3.38
MMP28-203ENST00000612672 BRINP3Q76B58 766 aa36.18■■■■□ 3.38
MMP28-203ENST00000612672 NHSL1Q5SYE7 1610 aa36.17■■■■□ 3.38
MMP28-203ENST00000612672 ASXL1Q8IXJ9 1541 aa36.17■■■■□ 3.38
MMP28-203ENST00000612672 MEX3CQ5U5Q3 659 aaKnown RBP36.13■■■■□ 3.37
MMP28-203ENST00000612672 DCCP43146 1447 aa36.12■■■■□ 3.37
MMP28-203ENST00000612672 MST1RQ04912 1400 aa36.12■■■■□ 3.37
MMP28-203ENST00000612672 ITGAEP38570 1179 aa36.1■■■■□ 3.37
MMP28-203ENST00000612672 TRIM52Q96A61 297 aa36.1■■■■□ 3.37
MMP28-203ENST00000612672 NALCNQ8IZF0 1738 aa36.1■■■■□ 3.37
MMP28-203ENST00000612672 METP08581 1390 aa36.09■■■■□ 3.37
MMP28-203ENST00000612672 CLTCL1P53675 1640 aa36.08■■■■□ 3.37
MMP28-203ENST00000612672 ZNF772Q68DY9 489 aaPredicted RBP36.07■■■■□ 3.36
MMP28-203ENST00000612672 UPF1Q92900 1129 aaKnown RBP eCLIP36.06■■■■□ 3.36
MMP28-203ENST00000612672 NEXMIFQ5QGS0 1516 aa36.06■■■■□ 3.36
MMP28-203ENST00000612672 SETD5Q9C0A6 1442 aa36.04■■■■□ 3.36
MMP28-203ENST00000612672 NUTM2BA6NNL0 878 aaPredicted RBP36.03■■■■□ 3.36
MMP28-203ENST00000612672 NUTM2EB1AL46 878 aaPredicted RBP36.03■■■■□ 3.36
MMP28-203ENST00000612672 NUTM2AQ8IVF1 878 aaPredicted RBP36.03■■■■□ 3.36
MMP28-203ENST00000612672 DDX17Q92841 729 aaKnown RBP35.99■■■■□ 3.35
MMP28-203ENST00000612672 ADGRL3Q9HAR2 1447 aa35.99■■■■□ 3.35
MMP28-203ENST00000612672 PPARGC1BQ86YN6 1023 aaKnown RBP35.98■■■■□ 3.35
MMP28-203ENST00000612672 ZNF326Q5BKZ1 582 aaKnown RBP35.96■■■■□ 3.35
MMP28-203ENST00000612672 AFF2P51816 1311 aa35.96■■■■□ 3.35
MMP28-203ENST00000612672 CDK12Q9NYV4 1490 aaPredicted RBP35.94■■■■□ 3.34
MMP28-203ENST00000612672 KIF1BO60333 1816 aa35.93■■■■□ 3.34
MMP28-203ENST00000612672 RXRBP28702 533 aa35.93■■■■□ 3.34
MMP28-203ENST00000612672 PNPLA6Q8IY17 1366 aa35.91■■■■□ 3.34
MMP28-203ENST00000612672 LAMC1P11047 1609 aa35.88■■■■□ 3.33
MMP28-203ENST00000612672 RGS12O14924 1447 aa35.87■■■■□ 3.33
MMP28-203ENST00000612672 C1orf167Q5SNV9 1468 aa35.85■■■■□ 3.33
MMP28-203ENST00000612672 LRRC59Q96AG4 307 aaKnown RBP35.83■■■■□ 3.33
MMP28-203ENST00000612672 C8orf37Q96NL8 207 aa35.81■■■■□ 3.32
MMP28-203ENST00000612672 NAIPQ13075 1403 aa35.8■■■■□ 3.32
MMP28-203ENST00000612672 PTCH1Q13635 1447 aa35.8■■■■□ 3.32
MMP28-203ENST00000612672 ROBO2Q9HCK4 1378 aa35.79■■■■□ 3.32
MMP28-203ENST00000612672 SRCAPQ6ZRS2 3230 aa35.79■■■■□ 3.32
MMP28-203ENST00000612672 PPLO60437 1756 aa35.74■■■■□ 3.31
MMP28-203ENST00000612672 QTRT2Q9H974 415 aaKnown RBP35.73■■■■□ 3.31
MMP28-203ENST00000612672 ORAI2Q96SN7 254 aa35.72■■■■□ 3.31
MMP28-203ENST00000612672 PRAG1Q86YV5 1406 aa35.72■■■■□ 3.31
MMP28-203ENST00000612672 RRBP1Q9P2E9 1410 aaKnown RBP35.72■■■■□ 3.31
MMP28-203ENST00000612672 ADAMTS2O95450 1211 aa35.7■■■■□ 3.31
MMP28-203ENST00000612672 SOS2Q07890 1332 aaPredicted RBP35.69■■■■□ 3.3
MMP28-203ENST00000612672 RBM6P78332 1123 aaKnown RBP35.69■■■■□ 3.3
MMP28-203ENST00000612672 EP400Q96L91 3159 aa35.68■■■■□ 3.3
MMP28-203ENST00000612672 COL22A1Q8NFW1 1626 aaPredicted RBP35.68■■■■□ 3.3
MMP28-203ENST00000612672 NGLY1Q96IV0 654 aa35.62■■■■□ 3.29
MMP28-203ENST00000612672 VGFO15240 615 aaPredicted RBP35.59■■■■□ 3.29
MMP28-203ENST00000612672 CDC42BPGQ6DT37 1551 aa35.59■■■■□ 3.29
MMP28-203ENST00000612672 HFM1A2PYH4 1435 aa35.57■■■■□ 3.29
MMP28-203ENST00000612672 MARF1Q9Y4F3 1742 aaKnown RBP35.57■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms