RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RIMS2Q9UQ26 1411 aa24.34■■□□□ 1.49
CCDC28A-202ENST00000611852 PCGF6Q9BYE7 350 aa24.33■■□□□ 1.49
CCDC28A-202ENST00000611852 IQGAP1P46940 1657 aa24.31■■□□□ 1.48
CCDC28A-202ENST00000611852 HDGFP51858 240 aaKnown RBP24.3■■□□□ 1.48
CCDC28A-202ENST00000611852 ZNF326Q5BKZ1 582 aaKnown RBP24.3■■□□□ 1.48
CCDC28A-202ENST00000611852 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.29■■□□□ 1.48
CCDC28A-202ENST00000611852 SPATA31E1Q6ZUB1 1445 aa24.27■■□□□ 1.48
CCDC28A-202ENST00000611852 PPP1R15AO75807 674 aaPredicted RBP24.26■■□□□ 1.47
CCDC28A-202ENST00000611852 NUTM2DQ5VT03 806 aaPredicted RBP24.26■■□□□ 1.47
CCDC28A-202ENST00000611852 NEXMIFQ5QGS0 1516 aa24.26■■□□□ 1.47
CCDC28A-202ENST00000611852 DHX57Q6P158 1386 aaKnown RBP24.24■■□□□ 1.47
CCDC28A-202ENST00000611852 PLEKHG1Q9ULL1 1385 aa24.24■■□□□ 1.47
CCDC28A-202ENST00000611852 RPGRIP1LQ68CZ1 1315 aa24.22■■□□□ 1.47
CCDC28A-202ENST00000611852 RGL3Q3MIN7 710 aa24.22■■□□□ 1.47
CCDC28A-202ENST00000611852 ZNF335Q9H4Z2 1342 aaPredicted RBP24.2■■□□□ 1.46
CCDC28A-202ENST00000611852 SENP3Q9H4L4 574 aaPredicted RBP24.2■■□□□ 1.46
CCDC28A-202ENST00000611852 BCANQ96GW7 911 aa24.19■■□□□ 1.46
CCDC28A-202ENST00000611852 PPLO60437 1756 aa24.18■■□□□ 1.46
CCDC28A-202ENST00000611852 SLC26A8Q96RN1 970 aa24.18■■□□□ 1.46
CCDC28A-202ENST00000611852 VGFO15240 615 aaPredicted RBP24.16■■□□□ 1.46
CCDC28A-202ENST00000611852 LTBP4Q8N2S1 1624 aa24.16■■□□□ 1.46
CCDC28A-202ENST00000611852 ADAMTS13Q76LX8 1427 aa24.15■■□□□ 1.46
CCDC28A-202ENST00000611852 IFT172Q9UG01 1749 aa24.14■■□□□ 1.46
CCDC28A-202ENST00000611852 SETBP1Q9Y6X0 1596 aa24.14■■□□□ 1.45
CCDC28A-202ENST00000611852 NRXN3Q9Y4C0 1643 aa24.13■■□□□ 1.45
CCDC28A-202ENST00000611852 TBX22Q9Y458 520 aa24.12■■□□□ 1.45
CCDC28A-202ENST00000611852 DIP2AQ14689 1571 aa24.1■■□□□ 1.45
CCDC28A-202ENST00000611852 STRCP1A6NGW2 1772 aa24.09■■□□□ 1.45
CCDC28A-202ENST00000611852 ADGRF5Q8IZF2 1346 aa24.09■■□□□ 1.45
CCDC28A-202ENST00000611852 SIN3AQ96ST3 1273 aa24.08■■□□□ 1.45
CCDC28A-202ENST00000611852 CERKQ8TCT0 537 aa24.06■■□□□ 1.44
CCDC28A-202ENST00000611852 CPS1P31327 1500 aa24.06■■□□□ 1.44
CCDC28A-202ENST00000611852 MYOM2P54296 1465 aa24.06■■□□□ 1.44
CCDC28A-202ENST00000611852 KCNA6P17658 529 aa24.05■■□□□ 1.44
CCDC28A-202ENST00000611852 PIK3R4Q99570 1358 aa24.04■■□□□ 1.44
CCDC28A-202ENST00000611852 CHD2O14647 1828 aaKnown RBP24.03■■□□□ 1.44
CCDC28A-202ENST00000611852 NRXN1Q9ULB1 1477 aa24.03■■□□□ 1.44
CCDC28A-202ENST00000611852 DCAF11Q8TEB1 546 aa24.03■■□□□ 1.44
CCDC28A-202ENST00000611852 PIK3C2GO75747 1445 aa24.03■■□□□ 1.44
CCDC28A-202ENST00000611852 NWD1Q149M9 1564 aa24.03■■□□□ 1.44
CCDC28A-202ENST00000611852 ALKQ9UM73 1620 aa24.02■■□□□ 1.44
CCDC28A-202ENST00000611852 METP08581 1390 aa24.02■■□□□ 1.44
CCDC28A-202ENST00000611852 SETD1AO15047 1707 aaKnown RBP24.01■■□□□ 1.43
CCDC28A-202ENST00000611852 NEUROD1Q13562 356 aa24.01■■□□□ 1.43
CCDC28A-202ENST00000611852 STAC3Q96MF2 364 aa24■■□□□ 1.43
CCDC28A-202ENST00000611852 PTPRUQ92729 1446 aa23.99■■□□□ 1.43
CCDC28A-202ENST00000611852 KDM2AQ9Y2K7 1162 aa23.99■■□□□ 1.43
CCDC28A-202ENST00000611852 LRRC7Q96NW7 1537 aa23.98■■□□□ 1.43
CCDC28A-202ENST00000611852 NKTRP30414 1462 aaKnown RBP23.97■■□□□ 1.43
CCDC28A-202ENST00000611852 IQSEC2Q5JU85 1478 aa23.96■■□□□ 1.43
CCDC28A-202ENST00000611852 AMOTL2Q9Y2J4 779 aa23.96■■□□□ 1.43
CCDC28A-202ENST00000611852 L3MBTL2Q969R5 705 aa23.94■■□□□ 1.42
CCDC28A-202ENST00000611852 C14orf93Q9H972 538 aaKnown RBP23.94■■□□□ 1.42
CCDC28A-202ENST00000611852 XRN1Q8IZH2 1706 aaKnown RBP23.93■■□□□ 1.42
CCDC28A-202ENST00000611852 PROSER2Q86WR7 435 aaPredicted RBP23.92■■□□□ 1.42
CCDC28A-202ENST00000611852 CFAP70Q5T0N1 1121 aa23.91■■□□□ 1.42
CCDC28A-202ENST00000611852 LAMC1P11047 1609 aa23.91■■□□□ 1.42
CCDC28A-202ENST00000611852 TMEM94Q12767 1356 aa23.91■■□□□ 1.42
CCDC28A-202ENST00000611852 XIRP1Q702N8 1843 aaKnown RBP23.9■■□□□ 1.42
CCDC28A-202ENST00000611852 ASXL1Q8IXJ9 1541 aa23.9■■□□□ 1.42
CCDC28A-202ENST00000611852 CLSPNQ9HAW4 1339 aa23.89■■□□□ 1.42
CCDC28A-202ENST00000611852 TMEM132EQ6IEE7 984 aa23.89■■□□□ 1.41
CCDC28A-202ENST00000611852 RBM33Q96EV2 1170 aaKnown RBP23.89■■□□□ 1.41
CCDC28A-202ENST00000611852 PRAG1Q86YV5 1406 aa23.86■■□□□ 1.41
CCDC28A-202ENST00000611852 TONSLQ96HA7 1378 aa23.85■■□□□ 1.41
CCDC28A-202ENST00000611852 CCER1Q8TC90 406 aaPredicted RBP23.85■■□□□ 1.41
CCDC28A-202ENST00000611852 PTCH1Q13635 1447 aa23.84■■□□□ 1.41
CCDC28A-202ENST00000611852 LRPPRCP42704 1394 aaKnown RBP23.84■■□□□ 1.41
CCDC28A-202ENST00000611852 NCOA3Q9Y6Q9 1424 aa23.83■■□□□ 1.41
CCDC28A-202ENST00000611852 ADGRB1O14514 1584 aa23.83■■□□□ 1.41
CCDC28A-202ENST00000611852 YTHDC2Q9H6S0 1430 aaKnown RBP23.83■■□□□ 1.4
CCDC28A-202ENST00000611852 ROBO2Q9HCK4 1378 aa23.82■■□□□ 1.4
CCDC28A-202ENST00000611852 FBXO41Q8TF61 875 aa23.82■■□□□ 1.4
CCDC28A-202ENST00000611852 STK26Q9P289 416 aa23.82■■□□□ 1.4
CCDC28A-202ENST00000611852 TECPR2O15040 1411 aa23.82■■□□□ 1.4
CCDC28A-202ENST00000611852 ABCC11Q96J66 1382 aa23.82■■□□□ 1.4
CCDC28A-202ENST00000611852 KIAA1210Q9ULL0 1709 aa23.8■■□□□ 1.4
CCDC28A-202ENST00000611852 UBAP1LF5GYI3 381 aa23.79■■□□□ 1.4
CCDC28A-202ENST00000611852 KNDC1Q76NI1 1749 aa23.79■■□□□ 1.4
CCDC28A-202ENST00000611852 MSH6P52701 1360 aa23.77■■□□□ 1.4
CCDC28A-202ENST00000611852 C14orf37Q86TY3 774 aa23.77■■□□□ 1.4
CCDC28A-202ENST00000611852 TOM1O60784 492 aa23.76■■□□□ 1.39
CCDC28A-202ENST00000611852 NBPF1Q3BBV0 1214 aa23.75■■□□□ 1.39
CCDC28A-202ENST00000611852 C19orf44Q9H6X5 657 aa23.74■■□□□ 1.39
CCDC28A-202ENST00000611852 NBPF8Q3BBV2 869 aa23.74■■□□□ 1.39
CCDC28A-202ENST00000611852 SIRT1Q96EB6 747 aa23.74■■□□□ 1.39
CCDC28A-202ENST00000611852 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.72■■□□□ 1.39
CCDC28A-202ENST00000611852 FAM135BQ49AJ0 1406 aa23.72■■□□□ 1.39
CCDC28A-202ENST00000611852 ADGRL3Q9HAR2 1447 aa23.72■■□□□ 1.39
CCDC28A-202ENST00000611852 TRPM1Q7Z4N2 1603 aa23.72■■□□□ 1.39
CCDC28A-202ENST00000611852 WAPLQ7Z5K2 1190 aa23.72■■□□□ 1.39
CCDC28A-202ENST00000611852 DLC1Q96QB1 1528 aa23.72■■□□□ 1.39
CCDC28A-202ENST00000611852 NALCNQ8IZF0 1738 aa23.71■■□□□ 1.39
CCDC28A-202ENST00000611852 TIMELESSQ9UNS1 1208 aa23.71■■□□□ 1.39
CCDC28A-202ENST00000611852 TRAK1Q9UPV9 953 aa23.71■■□□□ 1.39
CCDC28A-202ENST00000611852 PLEKHH1Q9ULM0 1364 aa23.71■■□□□ 1.39
CCDC28A-202ENST00000611852 ILDR1Q86SU0 546 aaPredicted RBP23.7■■□□□ 1.38
CCDC28A-202ENST00000611852 DCCP43146 1447 aa23.69■■□□□ 1.38
CCDC28A-202ENST00000611852 CADPS2Q86UW7 1296 aa23.68■■□□□ 1.38
CCDC28A-202ENST00000611852 ATF3P18847 181 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms