RNA–Protein interactions for RNA: ENST00000607020.5

SSBP4-214, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 504 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-214ENST00000607020 NWD1Q149M9 1564 aa23.48■■□□□ 1.35
SSBP4-214ENST00000607020 BCANQ96GW7 911 aa23.47■■□□□ 1.35
SSBP4-214ENST00000607020 TBX22Q9Y458 520 aa23.47■■□□□ 1.35
SSBP4-214ENST00000607020 PLEKHG1Q9ULL1 1385 aa23.47■■□□□ 1.35
SSBP4-214ENST00000607020 PTPN23Q9H3S7 1636 aa23.47■■□□□ 1.35
SSBP4-214ENST00000607020 ADGRB3O60242 1522 aa23.46■■□□□ 1.35
SSBP4-214ENST00000607020 APLP2Q06481 763 aa23.46■■□□□ 1.35
SSBP4-214ENST00000607020 ZFYVE9O95405 1425 aa23.45■■□□□ 1.34
SSBP4-214ENST00000607020 CROCC2H7BZ55 1655 aa23.44■■□□□ 1.34
SSBP4-214ENST00000607020 RPRD2Q5VT52 1461 aaKnown RBP23.43■■□□□ 1.34
SSBP4-214ENST00000607020 SPATA31A6Q5VVP1 1343 aa23.41■■□□□ 1.34
SSBP4-214ENST00000607020 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.4■■□□□ 1.34
SSBP4-214ENST00000607020 ADGRL2O95490 1459 aa23.4■■□□□ 1.34
SSBP4-214ENST00000607020 RIMS2Q9UQ26 1411 aa23.4■■□□□ 1.34
SSBP4-214ENST00000607020 PPP1R15AO75807 674 aaPredicted RBP23.39■■□□□ 1.33
SSBP4-214ENST00000607020 ZNF772Q68DY9 489 aaPredicted RBP23.37■■□□□ 1.33
SSBP4-214ENST00000607020 CADPS2Q86UW7 1296 aa23.37■■□□□ 1.33
SSBP4-214ENST00000607020 C19orf44Q9H6X5 657 aa23.37■■□□□ 1.33
SSBP4-214ENST00000607020 ANKRD50Q9ULJ7 1429 aa23.36■■□□□ 1.33
SSBP4-214ENST00000607020 PIK3R4Q99570 1358 aa23.35■■□□□ 1.33
SSBP4-214ENST00000607020 UPF1Q92900 1129 aaKnown RBP eCLIP23.33■■□□□ 1.33
SSBP4-214ENST00000607020 ADAMTS13Q76LX8 1427 aa23.32■■□□□ 1.32
SSBP4-214ENST00000607020 PHLPP1O60346 1717 aa23.31■■□□□ 1.32
SSBP4-214ENST00000607020 COL16A1Q07092 1604 aaPredicted RBP23.31■■□□□ 1.32
SSBP4-214ENST00000607020 ATF3P18847 181 aa23.31■■□□□ 1.32
SSBP4-214ENST00000607020 C14orf37Q86TY3 774 aa23.31■■□□□ 1.32
SSBP4-214ENST00000607020 LRP6O75581 1613 aa23.3■■□□□ 1.32
SSBP4-214ENST00000607020 MEX3CQ5U5Q3 659 aaKnown RBP23.29■■□□□ 1.32
SSBP4-214ENST00000607020 CHD2O14647 1828 aaKnown RBP23.28■■□□□ 1.32
SSBP4-214ENST00000607020 TMEM131LA2VDJ0 1609 aa23.27■■□□□ 1.32
SSBP4-214ENST00000607020 CHGAP10645 457 aaKnown RBP23.26■■□□□ 1.31
SSBP4-214ENST00000607020 FAM50AQ14320 339 aaKnown RBP23.26■■□□□ 1.31
SSBP4-214ENST00000607020 AHDC1Q5TGY3 1603 aaPredicted RBP23.26■■□□□ 1.31
SSBP4-214ENST00000607020 RXRBP28702 533 aa23.25■■□□□ 1.31
SSBP4-214ENST00000607020 BRINP3Q76B58 766 aa23.25■■□□□ 1.31
SSBP4-214ENST00000607020 AMOTL2Q9Y2J4 779 aa23.25■■□□□ 1.31
SSBP4-214ENST00000607020 NUTM2DQ5VT03 806 aaPredicted RBP23.23■■□□□ 1.31
SSBP4-214ENST00000607020 TRIM52Q96A61 297 aa23.23■■□□□ 1.31
SSBP4-214ENST00000607020 DIP2AQ14689 1571 aa23.22■■□□□ 1.31
SSBP4-214ENST00000607020 CDK12Q9NYV4 1490 aaPredicted RBP23.2■■□□□ 1.3
SSBP4-214ENST00000607020 DCCP43146 1447 aa23.2■■□□□ 1.3
SSBP4-214ENST00000607020 PTPRUQ92729 1446 aa23.19■■□□□ 1.3
SSBP4-214ENST00000607020 SETD1AO15047 1707 aaKnown RBP23.19■■□□□ 1.3
SSBP4-214ENST00000607020 SETD5Q9C0A6 1442 aa23.17■■□□□ 1.3
SSBP4-214ENST00000607020 ROCK1Q13464 1354 aa23.16■■□□□ 1.3
SSBP4-214ENST00000607020 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.16■■□□□ 1.3
SSBP4-214ENST00000607020 GCC2Q8IWJ2 1684 aa23.16■■□□□ 1.3
SSBP4-214ENST00000607020 NUTM2BA6NNL0 878 aaPredicted RBP23.15■■□□□ 1.3
SSBP4-214ENST00000607020 NUTM2EB1AL46 878 aaPredicted RBP23.15■■□□□ 1.3
SSBP4-214ENST00000607020 NUTM2AQ8IVF1 878 aaPredicted RBP23.15■■□□□ 1.3
SSBP4-214ENST00000607020 LRRC59Q96AG4 307 aaKnown RBP23.15■■□□□ 1.3
SSBP4-214ENST00000607020 SHPRHQ149N8 1683 aa23.15■■□□□ 1.3
SSBP4-214ENST00000607020 AFF2P51816 1311 aa23.14■■□□□ 1.3
SSBP4-214ENST00000607020 TRPM2O94759 1503 aa23.14■■□□□ 1.3
SSBP4-214ENST00000607020 UNC13BO14795 1591 aa23.13■■□□□ 1.29
SSBP4-214ENST00000607020 NUP155O75694 1391 aa23.11■■□□□ 1.29
SSBP4-214ENST00000607020 MYO5BQ9ULV0 1848 aa23.1■■□□□ 1.29
SSBP4-214ENST00000607020 MST1RQ04912 1400 aa23.1■■□□□ 1.29
SSBP4-214ENST00000607020 ASXL1Q8IXJ9 1541 aa23.09■■□□□ 1.29
SSBP4-214ENST00000607020 RBM6P78332 1123 aaKnown RBP23.08■■□□□ 1.29
SSBP4-214ENST00000607020 QTRT2Q9H974 415 aaKnown RBP23.08■■□□□ 1.29
SSBP4-214ENST00000607020 E9PCH4 1651 aa23.07■■□□□ 1.28
SSBP4-214ENST00000607020 METP08581 1390 aa23.06■■□□□ 1.28
SSBP4-214ENST00000607020 SETBP1Q9Y6X0 1596 aa23.05■■□□□ 1.28
SSBP4-214ENST00000607020 PNPLA6Q8IY17 1366 aa23.04■■□□□ 1.28
SSBP4-214ENST00000607020 IQGAP3Q86VI3 1631 aa23.04■■□□□ 1.28
SSBP4-214ENST00000607020 C8orf37Q96NL8 207 aa23.03■■□□□ 1.28
SSBP4-214ENST00000607020 ADGRL3Q9HAR2 1447 aa23.01■■□□□ 1.27
SSBP4-214ENST00000607020 XRN1Q8IZH2 1706 aaKnown RBP23■■□□□ 1.27
SSBP4-214ENST00000607020 ZNF326Q5BKZ1 582 aaKnown RBP23■■□□□ 1.27
SSBP4-214ENST00000607020 DDX17Q92841 729 aaKnown RBP23■■□□□ 1.27
SSBP4-214ENST00000607020 RGS12O14924 1447 aa22.99■■□□□ 1.27
SSBP4-214ENST00000607020 NGLY1Q96IV0 654 aa22.98■■□□□ 1.27
SSBP4-214ENST00000607020 NRXN3Q9Y4C0 1643 aa22.97■■□□□ 1.27
SSBP4-214ENST00000607020 NHSL1Q5SYE7 1610 aa22.97■■□□□ 1.27
SSBP4-214ENST00000607020 SOS2Q07890 1332 aaPredicted RBP22.96■■□□□ 1.27
SSBP4-214ENST00000607020 C1orf167Q5SNV9 1468 aa22.95■■□□□ 1.26
SSBP4-214ENST00000607020 ADAMTS2O95450 1211 aa22.93■■□□□ 1.26
SSBP4-214ENST00000607020 FNBP4Q8N3X1 1017 aaPredicted RBP22.93■■□□□ 1.26
SSBP4-214ENST00000607020 SRCAPQ6ZRS2 3230 aa22.91■■□□□ 1.26
SSBP4-214ENST00000607020 ATAD2Q6PL18 1390 aa22.9■■□□□ 1.26
SSBP4-214ENST00000607020 USP21Q9UK80 565 aa22.9■■□□□ 1.26
SSBP4-214ENST00000607020 TRPC5Q9UL62 973 aaPredicted RBP22.9■■□□□ 1.26
SSBP4-214ENST00000607020 VGFO15240 615 aaPredicted RBP22.89■■□□□ 1.25
SSBP4-214ENST00000607020 ORAI2Q96SN7 254 aa22.89■■□□□ 1.25
SSBP4-214ENST00000607020 PTCH1Q13635 1447 aa22.89■■□□□ 1.25
SSBP4-214ENST00000607020 ITGAEP38570 1179 aa22.87■■□□□ 1.25
SSBP4-214ENST00000607020 FOXD1Q16676 465 aa22.87■■□□□ 1.25
SSBP4-214ENST00000607020 PRAG1Q86YV5 1406 aa22.87■■□□□ 1.25
SSBP4-214ENST00000607020 NEXMIFQ5QGS0 1516 aa22.86■■□□□ 1.25
SSBP4-214ENST00000607020 ROBO2Q9HCK4 1378 aa22.86■■□□□ 1.25
SSBP4-214ENST00000607020 LAMC1P11047 1609 aa22.86■■□□□ 1.25
SSBP4-214ENST00000607020 CCDC125Q86Z20 511 aa22.84■■□□□ 1.25
SSBP4-214ENST00000607020 RPGRIP1LQ68CZ1 1315 aa22.83■■□□□ 1.25
SSBP4-214ENST00000607020 ATRNO75882 1429 aa22.82■■□□□ 1.24
SSBP4-214ENST00000607020 ZRANB1Q9UGI0 708 aa22.81■■□□□ 1.24
SSBP4-214ENST00000607020 SPHKAPQ2M3C7 1700 aa22.8■■□□□ 1.24
SSBP4-214ENST00000607020 HFM1A2PYH4 1435 aa22.8■■□□□ 1.24
SSBP4-214ENST00000607020 NALCNQ8IZF0 1738 aa22.79■■□□□ 1.24
SSBP4-214ENST00000607020 NPHP3Q7Z494 1330 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms