RNA–Protein interactions for RNA: ENST00000606213.5

PTPRN-219, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-219ENST00000606213 SENP3Q9H4L4 574 aaPredicted RBP35.03■■■■□ 3.2
PTPRN-219ENST00000606213 SPHKAPQ2M3C7 1700 aa35.01■■■■□ 3.2
PTPRN-219ENST00000606213 MYO5BQ9ULV0 1848 aa35.01■■■■□ 3.19
PTPRN-219ENST00000606213 ZFYVE9O95405 1425 aa34.99■■■■□ 3.19
PTPRN-219ENST00000606213 ZNF326Q5BKZ1 582 aaKnown RBP34.97■■■■□ 3.19
PTPRN-219ENST00000606213 NUTM2DQ5VT03 806 aaPredicted RBP34.96■■■■□ 3.19
PTPRN-219ENST00000606213 TOM1O60784 492 aa34.95■■■■□ 3.19
PTPRN-219ENST00000606213 PLEKHG1Q9ULL1 1385 aa34.95■■■■□ 3.19
PTPRN-219ENST00000606213 SCAF1Q9H7N4 1312 aaKnown RBP34.93■■■■□ 3.18
PTPRN-219ENST00000606213 ACIN1Q9UKV3 1341 aaKnown RBP34.92■■■■□ 3.18
PTPRN-219ENST00000606213 TRPM2O94759 1503 aa34.91■■■■□ 3.18
PTPRN-219ENST00000606213 LRRC7Q96NW7 1537 aa34.91■■■■□ 3.18
PTPRN-219ENST00000606213 STRCP1A6NGW2 1772 aa34.9■■■■□ 3.18
PTPRN-219ENST00000606213 KCNA6P17658 529 aa34.89■■■■□ 3.18
PTPRN-219ENST00000606213 SETD5Q9C0A6 1442 aa34.89■■■■□ 3.18
PTPRN-219ENST00000606213 PIP4K2BP78356 416 aa34.87■■■■□ 3.17
PTPRN-219ENST00000606213 CLTCL1P53675 1640 aa34.84■■■■□ 3.17
PTPRN-219ENST00000606213 MPHOSPH9Q99550 1183 aa34.84■■■■□ 3.17
PTPRN-219ENST00000606213 FOXD1Q16676 465 aa34.82■■■■□ 3.16
PTPRN-219ENST00000606213 PROSER2Q86WR7 435 aaPredicted RBP34.82■■■■□ 3.16
PTPRN-219ENST00000606213 TBX22Q9Y458 520 aa34.82■■■■□ 3.16
PTPRN-219ENST00000606213 KIF1BO60333 1816 aa34.77■■■■□ 3.16
PTPRN-219ENST00000606213 TMEM94Q12767 1356 aa34.75■■■■□ 3.15
PTPRN-219ENST00000606213 RAB3GAP2Q9H2M9 1393 aa34.74■■■■□ 3.15
PTPRN-219ENST00000606213 NKTRP30414 1462 aaKnown RBP34.73■■■■□ 3.15
PTPRN-219ENST00000606213 DIP2AQ14689 1571 aa34.73■■■■□ 3.15
PTPRN-219ENST00000606213 CCDC144AA2RUR9 1427 aa34.72■■■■□ 3.15
PTPRN-219ENST00000606213 ADAMTS13Q76LX8 1427 aa34.72■■■■□ 3.15
PTPRN-219ENST00000606213 NWD1Q149M9 1564 aa34.7■■■■□ 3.15
PTPRN-219ENST00000606213 RBM33Q96EV2 1170 aaKnown RBP34.7■■■■□ 3.15
PTPRN-219ENST00000606213 PIK3R4Q99570 1358 aa34.68■■■■□ 3.14
PTPRN-219ENST00000606213 VGFO15240 615 aaPredicted RBP34.67■■■■□ 3.14
PTPRN-219ENST00000606213 RPGRIP1LQ68CZ1 1315 aa34.66■■■■□ 3.14
PTPRN-219ENST00000606213 NEXMIFQ5QGS0 1516 aa34.65■■■■□ 3.14
PTPRN-219ENST00000606213 DISP3Q9P2K9 1392 aa34.65■■■■□ 3.14
PTPRN-219ENST00000606213 CHD2O14647 1828 aaKnown RBP34.65■■■■□ 3.14
PTPRN-219ENST00000606213 C14orf37Q86TY3 774 aa34.64■■■■□ 3.14
PTPRN-219ENST00000606213 XIRP1Q702N8 1843 aaKnown RBP34.62■■■■□ 3.13
PTPRN-219ENST00000606213 SETBP1Q9Y6X0 1596 aa34.62■■■■□ 3.13
PTPRN-219ENST00000606213 MSH6P52701 1360 aa34.62■■■■□ 3.13
PTPRN-219ENST00000606213 HSPA1LP34931 641 aa34.61■■■■□ 3.13
PTPRN-219ENST00000606213 AMOTL2Q9Y2J4 779 aa34.61■■■■□ 3.13
PTPRN-219ENST00000606213 RGL3Q3MIN7 710 aa34.59■■■■□ 3.13
PTPRN-219ENST00000606213 ALKQ9UM73 1620 aa34.58■■■■□ 3.13
PTPRN-219ENST00000606213 NRXN3Q9Y4C0 1643 aa34.55■■■■□ 3.12
PTPRN-219ENST00000606213 HRCP23327 699 aa34.54■■■■□ 3.12
PTPRN-219ENST00000606213 METP08581 1390 aa34.51■■■■□ 3.12
PTPRN-219ENST00000606213 NCOA3Q9Y6Q9 1424 aa34.51■■■■□ 3.12
PTPRN-219ENST00000606213 PTPRUQ92729 1446 aa34.5■■■■□ 3.11
PTPRN-219ENST00000606213 ILDR2Q71H61 639 aa34.47■■■■□ 3.11
PTPRN-219ENST00000606213 SPATA31E1Q6ZUB1 1445 aa34.47■■■■□ 3.11
PTPRN-219ENST00000606213 ANKRD30BQ9BXX2 1392 aa34.46■■■■□ 3.11
PTPRN-219ENST00000606213 PPLO60437 1756 aa34.46■■■■□ 3.11
PTPRN-219ENST00000606213 ATF3P18847 181 aa34.45■■■■□ 3.11
PTPRN-219ENST00000606213 C19orf44Q9H6X5 657 aa34.45■■■■□ 3.11
PTPRN-219ENST00000606213 SLAIN2Q9P270 581 aa34.44■■■■□ 3.1
PTPRN-219ENST00000606213 FAM135BQ49AJ0 1406 aa34.43■■■■□ 3.1
PTPRN-219ENST00000606213 CADPS2Q86UW7 1296 aa34.41■■■■□ 3.1
PTPRN-219ENST00000606213 XRN1Q8IZH2 1706 aaKnown RBP34.4■■■■□ 3.1
PTPRN-219ENST00000606213 ADGRF5Q8IZF2 1346 aa34.39■■■■□ 3.1
PTPRN-219ENST00000606213 ROBO1Q9Y6N7 1651 aa34.33■■■■□ 3.09
PTPRN-219ENST00000606213 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.31■■■■□ 3.08
PTPRN-219ENST00000606213 IFT172Q9UG01 1749 aa34.29■■■■□ 3.08
PTPRN-219ENST00000606213 SETD1AO15047 1707 aaKnown RBP34.28■■■■□ 3.08
PTPRN-219ENST00000606213 DCCP43146 1447 aa34.27■■■■□ 3.08
PTPRN-219ENST00000606213 PTCH1Q13635 1447 aa34.27■■■■□ 3.08
PTPRN-219ENST00000606213 PIK3C2GO75747 1445 aa34.24■■■■□ 3.07
PTPRN-219ENST00000606213 ADGRL3Q9HAR2 1447 aa34.24■■■■□ 3.07
PTPRN-219ENST00000606213 STK26Q9P289 416 aa34.24■■■■□ 3.07
PTPRN-219ENST00000606213 ROBO2Q9HCK4 1378 aa34.23■■■■□ 3.07
PTPRN-219ENST00000606213 TMEM132EQ6IEE7 984 aa34.21■■■■□ 3.07
PTPRN-219ENST00000606213 MYOM2P54296 1465 aa34.2■■■■□ 3.06
PTPRN-219ENST00000606213 KDM2AQ9Y2K7 1162 aa34.18■■■■□ 3.06
PTPRN-219ENST00000606213 MED1Q15648 1581 aaPredicted RBP34.17■■■■□ 3.06
PTPRN-219ENST00000606213 PRAG1Q86YV5 1406 aa34.17■■■■□ 3.06
PTPRN-219ENST00000606213 DCAF11Q8TEB1 546 aa34.17■■■■□ 3.06
PTPRN-219ENST00000606213 C14orf93Q9H972 538 aaKnown RBP34.17■■■■□ 3.06
PTPRN-219ENST00000606213 PHF23Q9BUL5 403 aaPredicted RBP34.16■■■■□ 3.06
PTPRN-219ENST00000606213 LRPPRCP42704 1394 aaKnown RBP34.15■■■■□ 3.06
PTPRN-219ENST00000606213 CFAP70Q5T0N1 1121 aa34.14■■■■□ 3.06
PTPRN-219ENST00000606213 PHLPP1O60346 1717 aa34.13■■■■□ 3.05
PTPRN-219ENST00000606213 NALCNQ8IZF0 1738 aa34.13■■■■□ 3.05
PTPRN-219ENST00000606213 BRINP3Q76B58 766 aa34.13■■■■□ 3.05
PTPRN-219ENST00000606213 NRXN1Q9ULB1 1477 aa34.13■■■■□ 3.05
PTPRN-219ENST00000606213 MST1RQ04912 1400 aa34.13■■■■□ 3.05
PTPRN-219ENST00000606213 SOCS7O14512 581 aa34.11■■■■□ 3.05
PTPRN-219ENST00000606213 STAC3Q96MF2 364 aa34.11■■■■□ 3.05
PTPRN-219ENST00000606213 DHX57Q6P158 1386 aaKnown RBP34.11■■■■□ 3.05
PTPRN-219ENST00000606213 ABCC11Q96J66 1382 aa34.11■■■■□ 3.05
PTPRN-219ENST00000606213 YTHDC2Q9H6S0 1430 aaKnown RBP34.1■■■■□ 3.05
PTPRN-219ENST00000606213 LAMC1P11047 1609 aa34.08■■■■□ 3.05
PTPRN-219ENST00000606213 TECPR2O15040 1411 aa34.08■■■■□ 3.05
PTPRN-219ENST00000606213 WAPLQ7Z5K2 1190 aa34.08■■■■□ 3.05
PTPRN-219ENST00000606213 ASXL1Q8IXJ9 1541 aa34.07■■■■□ 3.04
PTPRN-219ENST00000606213 JCADQ9P266 1359 aa34.05■■■■□ 3.04
PTPRN-219ENST00000606213 AHDC1Q5TGY3 1603 aaPredicted RBP34.02■■■■□ 3.04
PTPRN-219ENST00000606213 C1orf167Q5SNV9 1468 aa34.01■■■■□ 3.04
PTPRN-219ENST00000606213 TRIM26Q12899 539 aaPredicted RBP34.01■■■■□ 3.03
PTPRN-219ENST00000606213 KNDC1Q76NI1 1749 aa34■■■■□ 3.03
PTPRN-219ENST00000606213 SIRT1Q96EB6 747 aa33.99■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms