RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 PIP4K2BP78356 416 aa16.3■□□□□ 0.2
VRK3-214ENST00000598553 SLC26A8Q96RN1 970 aa16.3■□□□□ 0.2
VRK3-214ENST00000598553 NUTM2DQ5VT03 806 aaPredicted RBP16.29■□□□□ 0.2
VRK3-214ENST00000598553 SLC52A1Q9NWF4 448 aa16.29■□□□□ 0.2
VRK3-214ENST00000598553 NRXN3Q9Y4C0 1643 aa16.29■□□□□ 0.2
VRK3-214ENST00000598553 RBM33Q96EV2 1170 aaKnown RBP16.28■□□□□ 0.2
VRK3-214ENST00000598553 EID1Q9Y6B2 187 aa16.28■□□□□ 0.2
VRK3-214ENST00000598553 SCAF1Q9H7N4 1312 aaKnown RBP16.27■□□□□ 0.2
VRK3-214ENST00000598553 HSPA1LP34931 641 aa16.26■□□□□ 0.19
VRK3-214ENST00000598553 ADAMTS13Q76LX8 1427 aa16.26■□□□□ 0.19
VRK3-214ENST00000598553 CHGAP10645 457 aaKnown RBP16.25■□□□□ 0.19
VRK3-214ENST00000598553 ILDR2Q71H61 639 aa16.25■□□□□ 0.19
VRK3-214ENST00000598553 HFM1A2PYH4 1435 aa16.25■□□□□ 0.19
VRK3-214ENST00000598553 PLEKHG1Q9ULL1 1385 aa16.25■□□□□ 0.19
VRK3-214ENST00000598553 DISP3Q9P2K9 1392 aa16.24■□□□□ 0.19
VRK3-214ENST00000598553 KIF1BO60333 1816 aa16.23■□□□□ 0.19
VRK3-214ENST00000598553 TRPM2O94759 1503 aa16.23■□□□□ 0.19
VRK3-214ENST00000598553 TMEM94Q12767 1356 aa16.23■□□□□ 0.19
VRK3-214ENST00000598553 MED1Q15648 1581 aaPredicted RBP16.21■□□□□ 0.19
VRK3-214ENST00000598553 NEXMIFQ5QGS0 1516 aa16.21■□□□□ 0.19
VRK3-214ENST00000598553 TOM1O60784 492 aa16.21■□□□□ 0.19
VRK3-214ENST00000598553 NKTRP30414 1462 aaKnown RBP16.21■□□□□ 0.19
VRK3-214ENST00000598553 KCNA6P17658 529 aa16.2■□□□□ 0.18
VRK3-214ENST00000598553 PTPRUQ92729 1446 aa16.19■□□□□ 0.18
VRK3-214ENST00000598553 ROBO1Q9Y6N7 1651 aa16.19■□□□□ 0.18
VRK3-214ENST00000598553 SETD1AO15047 1707 aaKnown RBP16.19■□□□□ 0.18
VRK3-214ENST00000598553 BCANQ96GW7 911 aa16.18■□□□□ 0.18
VRK3-214ENST00000598553 XRN1Q8IZH2 1706 aaKnown RBP16.18■□□□□ 0.18
VRK3-214ENST00000598553 DIP2AQ14689 1571 aa16.17■□□□□ 0.18
VRK3-214ENST00000598553 PPP1R15AO75807 674 aaPredicted RBP16.17■□□□□ 0.18
VRK3-214ENST00000598553 SETBP1Q9Y6X0 1596 aa16.17■□□□□ 0.18
VRK3-214ENST00000598553 PPLO60437 1756 aa16.15■□□□□ 0.18
VRK3-214ENST00000598553 FOXD1Q16676 465 aa16.15■□□□□ 0.18
VRK3-214ENST00000598553 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.15■□□□□ 0.18
VRK3-214ENST00000598553 PROSER2Q86WR7 435 aaPredicted RBP16.14■□□□□ 0.17
VRK3-214ENST00000598553 TRIM52Q96A61 297 aa16.14■□□□□ 0.17
VRK3-214ENST00000598553 TBX22Q9Y458 520 aa16.12■□□□□ 0.17
VRK3-214ENST00000598553 IFT172Q9UG01 1749 aa16.11■□□□□ 0.17
VRK3-214ENST00000598553 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.1■□□□□ 0.17
VRK3-214ENST00000598553 NALCNQ8IZF0 1738 aa16.1■□□□□ 0.17
VRK3-214ENST00000598553 METP08581 1390 aa16.1■□□□□ 0.17
VRK3-214ENST00000598553 SLC4A1APQ9BWU0 796 aaKnown RBP16.09■□□□□ 0.17
VRK3-214ENST00000598553 PHLPP1O60346 1717 aa16.08■□□□□ 0.17
VRK3-214ENST00000598553 ZNF326Q5BKZ1 582 aaKnown RBP16.08■□□□□ 0.16
VRK3-214ENST00000598553 FAM135BQ49AJ0 1406 aa16.08■□□□□ 0.16
VRK3-214ENST00000598553 MSH6P52701 1360 aa16.06■□□□□ 0.16
VRK3-214ENST00000598553 HDGFP51858 240 aaKnown RBP16.06■□□□□ 0.16
VRK3-214ENST00000598553 COL16A1Q07092 1604 aaPredicted RBP16.05■□□□□ 0.16
VRK3-214ENST00000598553 PIK3R4Q99570 1358 aa16.05■□□□□ 0.16
VRK3-214ENST00000598553 AMOTL2Q9Y2J4 779 aa16.05■□□□□ 0.16
VRK3-214ENST00000598553 ASXL1Q8IXJ9 1541 aa16.02■□□□□ 0.15
VRK3-214ENST00000598553 SPATA31E1Q6ZUB1 1445 aa16.02■□□□□ 0.15
VRK3-214ENST00000598553 MPHOSPH9Q99550 1183 aa16.01■□□□□ 0.15
VRK3-214ENST00000598553 SETD5Q9C0A6 1442 aa16.01■□□□□ 0.15
VRK3-214ENST00000598553 RAB3GAP2Q9H2M9 1393 aa16■□□□□ 0.15
VRK3-214ENST00000598553 SLAIN2Q9P270 581 aa15.99■□□□□ 0.15
VRK3-214ENST00000598553 NCOA3Q9Y6Q9 1424 aa15.99■□□□□ 0.15
VRK3-214ENST00000598553 AHDC1Q5TGY3 1603 aaPredicted RBP15.98■□□□□ 0.15
VRK3-214ENST00000598553 C14orf37Q86TY3 774 aa15.98■□□□□ 0.15
VRK3-214ENST00000598553 NHSL1Q5SYE7 1610 aa15.97■□□□□ 0.15
VRK3-214ENST00000598553 ADGRF5Q8IZF2 1346 aa15.97■□□□□ 0.15
VRK3-214ENST00000598553 CCDC144AA2RUR9 1427 aa15.97■□□□□ 0.15
VRK3-214ENST00000598553 MST1RQ04912 1400 aa15.97■□□□□ 0.15
VRK3-214ENST00000598553 RGS17Q9UGC6 210 aaPredicted RBP15.97■□□□□ 0.15
VRK3-214ENST00000598553 ROBO2Q9HCK4 1378 aa15.97■□□□□ 0.15
VRK3-214ENST00000598553 ADGRL3Q9HAR2 1447 aa15.96■□□□□ 0.15
VRK3-214ENST00000598553 LRP6O75581 1613 aa15.95■□□□□ 0.14
VRK3-214ENST00000598553 SOCS7O14512 581 aa15.94■□□□□ 0.14
VRK3-214ENST00000598553 RGL3Q3MIN7 710 aa15.94■□□□□ 0.14
VRK3-214ENST00000598553 C19orf44Q9H6X5 657 aa15.94■□□□□ 0.14
VRK3-214ENST00000598553 SHPRHQ149N8 1683 aa15.94■□□□□ 0.14
VRK3-214ENST00000598553 KNDC1Q76NI1 1749 aa15.94■□□□□ 0.14
VRK3-214ENST00000598553 PTCH1Q13635 1447 aa15.94■□□□□ 0.14
VRK3-214ENST00000598553 DCCP43146 1447 aa15.93■□□□□ 0.14
VRK3-214ENST00000598553 PRAG1Q86YV5 1406 aa15.93■□□□□ 0.14
VRK3-214ENST00000598553 BRINP3Q76B58 766 aa15.92■□□□□ 0.14
VRK3-214ENST00000598553 RPGRIP1LQ68CZ1 1315 aa15.92■□□□□ 0.14
VRK3-214ENST00000598553 DDX17Q92841 729 aaKnown RBP15.91■□□□□ 0.14
VRK3-214ENST00000598553 PIK3C2GO75747 1445 aa15.91■□□□□ 0.14
VRK3-214ENST00000598553 VGFO15240 615 aaPredicted RBP15.9■□□□□ 0.14
VRK3-214ENST00000598553 ATF3P18847 181 aa15.9■□□□□ 0.14
VRK3-214ENST00000598553 CADPS2Q86UW7 1296 aa15.9■□□□□ 0.14
VRK3-214ENST00000598553 PHF23Q9BUL5 403 aaPredicted RBP15.9■□□□□ 0.14
VRK3-214ENST00000598553 PLEKHH1Q9ULM0 1364 aa15.88■□□□□ 0.13
VRK3-214ENST00000598553 NRXN1Q9ULB1 1477 aa15.88■□□□□ 0.13
VRK3-214ENST00000598553 JCADQ9P266 1359 aa15.87■□□□□ 0.13
VRK3-214ENST00000598553 RGPD8O14715 1765 aaPredicted RBP15.87■□□□□ 0.13
VRK3-214ENST00000598553 LAMC1P11047 1609 aa15.87■□□□□ 0.13
VRK3-214ENST00000598553 C1orf167Q5SNV9 1468 aa15.86■□□□□ 0.13
VRK3-214ENST00000598553 TMEM132EQ6IEE7 984 aa15.86■□□□□ 0.13
VRK3-214ENST00000598553 POTEAQ6S8J7 498 aa15.86■□□□□ 0.13
VRK3-214ENST00000598553 ANKRD30BQ9BXX2 1392 aa15.86■□□□□ 0.13
VRK3-214ENST00000598553 MYOM2P54296 1465 aa15.85■□□□□ 0.13
VRK3-214ENST00000598553 CDC42BPGQ6DT37 1551 aa15.85■□□□□ 0.13
VRK3-214ENST00000598553 TECPR2O15040 1411 aa15.85■□□□□ 0.13
VRK3-214ENST00000598553 FMN2Q9NZ56 1722 aa15.84■□□□□ 0.13
VRK3-214ENST00000598553 WAPLQ7Z5K2 1190 aa15.83■□□□□ 0.12
VRK3-214ENST00000598553 STK26Q9P289 416 aa15.83■□□□□ 0.12
VRK3-214ENST00000598553 ORAI2Q96SN7 254 aa15.82■□□□□ 0.12
VRK3-214ENST00000598553 LRPPRCP42704 1394 aaKnown RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms