RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 RAB3GAP2Q9H2M9 1393 aa24.17■■□□□ 1.46
TRIM28-213ENST00000598355 ILDR1Q86SU0 546 aaPredicted RBP24.17■■□□□ 1.46
TRIM28-213ENST00000598355 SLC4A1APQ9BWU0 796 aaKnown RBP24.16■■□□□ 1.46
TRIM28-213ENST00000598355 NWD1Q149M9 1564 aa24.15■■□□□ 1.46
TRIM28-213ENST00000598355 PLEKHG1Q9ULL1 1385 aa24.15■■□□□ 1.46
TRIM28-213ENST00000598355 NEXMIFQ5QGS0 1516 aa24.14■■□□□ 1.45
TRIM28-213ENST00000598355 DIP2AQ14689 1571 aa24.13■■□□□ 1.45
TRIM28-213ENST00000598355 NRXN3Q9Y4C0 1643 aa24.12■■□□□ 1.45
TRIM28-213ENST00000598355 XIRP1Q702N8 1843 aaKnown RBP24.11■■□□□ 1.45
TRIM28-213ENST00000598355 CHD2O14647 1828 aaKnown RBP24.1■■□□□ 1.45
TRIM28-213ENST00000598355 SETBP1Q9Y6X0 1596 aa24.09■■□□□ 1.45
TRIM28-213ENST00000598355 MPHOSPH9Q99550 1183 aa24.08■■□□□ 1.45
TRIM28-213ENST00000598355 LRRC7Q96NW7 1537 aa24.08■■□□□ 1.45
TRIM28-213ENST00000598355 PPLO60437 1756 aa24.08■■□□□ 1.44
TRIM28-213ENST00000598355 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.07■■□□□ 1.44
TRIM28-213ENST00000598355 ADAMTS13Q76LX8 1427 aa24.07■■□□□ 1.44
TRIM28-213ENST00000598355 CHGAP10645 457 aaKnown RBP24.06■■□□□ 1.44
TRIM28-213ENST00000598355 HRCP23327 699 aa24.06■■□□□ 1.44
TRIM28-213ENST00000598355 IFT172Q9UG01 1749 aa24.06■■□□□ 1.44
TRIM28-213ENST00000598355 HDGFP51858 240 aaKnown RBP24.05■■□□□ 1.44
TRIM28-213ENST00000598355 NKTRP30414 1462 aaKnown RBP24.04■■□□□ 1.44
TRIM28-213ENST00000598355 ALKQ9UM73 1620 aa24.02■■□□□ 1.44
TRIM28-213ENST00000598355 SETD1AO15047 1707 aaKnown RBP24.02■■□□□ 1.44
TRIM28-213ENST00000598355 FOXD1Q16676 465 aa24.02■■□□□ 1.44
TRIM28-213ENST00000598355 CCDC144AA2RUR9 1427 aa24.01■■□□□ 1.43
TRIM28-213ENST00000598355 SPATA31E1Q6ZUB1 1445 aa24.01■■□□□ 1.43
TRIM28-213ENST00000598355 PPP1R15AO75807 674 aaPredicted RBP23.99■■□□□ 1.43
TRIM28-213ENST00000598355 SLC26A8Q96RN1 970 aa23.99■■□□□ 1.43
TRIM28-213ENST00000598355 XRN1Q8IZH2 1706 aaKnown RBP23.98■■□□□ 1.43
TRIM28-213ENST00000598355 PIK3R4Q99570 1358 aa23.97■■□□□ 1.43
TRIM28-213ENST00000598355 TBX22Q9Y458 520 aa23.97■■□□□ 1.43
TRIM28-213ENST00000598355 KCNA6P17658 529 aa23.96■■□□□ 1.43
TRIM28-213ENST00000598355 NUTM2DQ5VT03 806 aaPredicted RBP23.94■■□□□ 1.42
TRIM28-213ENST00000598355 RPGRIP1LQ68CZ1 1315 aa23.93■■□□□ 1.42
TRIM28-213ENST00000598355 ZNF326Q5BKZ1 582 aaKnown RBP23.92■■□□□ 1.42
TRIM28-213ENST00000598355 ANKRD30BQ9BXX2 1392 aa23.91■■□□□ 1.42
TRIM28-213ENST00000598355 PTPRUQ92729 1446 aa23.89■■□□□ 1.41
TRIM28-213ENST00000598355 TMEM94Q12767 1356 aa23.88■■□□□ 1.41
TRIM28-213ENST00000598355 BCANQ96GW7 911 aa23.87■■□□□ 1.41
TRIM28-213ENST00000598355 PRAG1Q86YV5 1406 aa23.86■■□□□ 1.41
TRIM28-213ENST00000598355 UBAP1LF5GYI3 381 aa23.85■■□□□ 1.41
TRIM28-213ENST00000598355 NCOA3Q9Y6Q9 1424 aa23.84■■□□□ 1.41
TRIM28-213ENST00000598355 MYOM2P54296 1465 aa23.84■■□□□ 1.41
TRIM28-213ENST00000598355 METP08581 1390 aa23.84■■□□□ 1.41
TRIM28-213ENST00000598355 VGFO15240 615 aaPredicted RBP23.84■■□□□ 1.41
TRIM28-213ENST00000598355 SENP3Q9H4L4 574 aaPredicted RBP23.84■■□□□ 1.41
TRIM28-213ENST00000598355 NRXN1Q9ULB1 1477 aa23.83■■□□□ 1.41
TRIM28-213ENST00000598355 TOM1O60784 492 aa23.81■■□□□ 1.4
TRIM28-213ENST00000598355 PIK3C2GO75747 1445 aa23.81■■□□□ 1.4
TRIM28-213ENST00000598355 LAMC1P11047 1609 aa23.8■■□□□ 1.4
TRIM28-213ENST00000598355 ASXL1Q8IXJ9 1541 aa23.79■■□□□ 1.4
TRIM28-213ENST00000598355 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.79■■□□□ 1.4
TRIM28-213ENST00000598355 PROSER2Q86WR7 435 aaPredicted RBP23.78■■□□□ 1.4
TRIM28-213ENST00000598355 PTCH1Q13635 1447 aa23.77■■□□□ 1.4
TRIM28-213ENST00000598355 KNDC1Q76NI1 1749 aa23.77■■□□□ 1.4
TRIM28-213ENST00000598355 ADGRF5Q8IZF2 1346 aa23.77■■□□□ 1.4
TRIM28-213ENST00000598355 NALCNQ8IZF0 1738 aa23.76■■□□□ 1.39
TRIM28-213ENST00000598355 AMOTL2Q9Y2J4 779 aa23.75■■□□□ 1.39
TRIM28-213ENST00000598355 RGL3Q3MIN7 710 aa23.74■■□□□ 1.39
TRIM28-213ENST00000598355 MSH6P52701 1360 aa23.73■■□□□ 1.39
TRIM28-213ENST00000598355 DCCP43146 1447 aa23.72■■□□□ 1.39
TRIM28-213ENST00000598355 ROBO1Q9Y6N7 1651 aa23.71■■□□□ 1.39
TRIM28-213ENST00000598355 TECPR2O15040 1411 aa23.71■■□□□ 1.39
TRIM28-213ENST00000598355 RBM33Q96EV2 1170 aaKnown RBP23.71■■□□□ 1.39
TRIM28-213ENST00000598355 TRIM26Q12899 539 aaPredicted RBP23.69■■□□□ 1.38
TRIM28-213ENST00000598355 FAM135BQ49AJ0 1406 aa23.68■■□□□ 1.38
TRIM28-213ENST00000598355 ADGRL3Q9HAR2 1447 aa23.67■■□□□ 1.38
TRIM28-213ENST00000598355 DHX57Q6P158 1386 aaKnown RBP23.66■■□□□ 1.38
TRIM28-213ENST00000598355 PIP4K2BP78356 416 aa23.66■■□□□ 1.38
TRIM28-213ENST00000598355 ROBO2Q9HCK4 1378 aa23.65■■□□□ 1.38
TRIM28-213ENST00000598355 ADGRB1O14514 1584 aa23.64■■□□□ 1.37
TRIM28-213ENST00000598355 C19orf44Q9H6X5 657 aa23.63■■□□□ 1.37
TRIM28-213ENST00000598355 LRPPRCP42704 1394 aaKnown RBP23.63■■□□□ 1.37
TRIM28-213ENST00000598355 SCAF1Q9H7N4 1312 aaKnown RBP23.61■■□□□ 1.37
TRIM28-213ENST00000598355 STAC3Q96MF2 364 aa23.61■■□□□ 1.37
TRIM28-213ENST00000598355 C14orf93Q9H972 538 aaKnown RBP23.61■■□□□ 1.37
TRIM28-213ENST00000598355 ABCC11Q96J66 1382 aa23.61■■□□□ 1.37
TRIM28-213ENST00000598355 KIAA1210Q9ULL0 1709 aa23.61■■□□□ 1.37
TRIM28-213ENST00000598355 HSPA1LP34931 641 aa23.6■■□□□ 1.37
TRIM28-213ENST00000598355 CDC42BPGQ6DT37 1551 aa23.6■■□□□ 1.37
TRIM28-213ENST00000598355 YTHDC2Q9H6S0 1430 aaKnown RBP23.59■■□□□ 1.37
TRIM28-213ENST00000598355 MST1RQ04912 1400 aa23.59■■□□□ 1.37
TRIM28-213ENST00000598355 CADPS2Q86UW7 1296 aa23.58■■□□□ 1.37
TRIM28-213ENST00000598355 DLC1Q96QB1 1528 aa23.58■■□□□ 1.36
TRIM28-213ENST00000598355 AHDC1Q5TGY3 1603 aaPredicted RBP23.57■■□□□ 1.36
TRIM28-213ENST00000598355 SLAIN2Q9P270 581 aa23.56■■□□□ 1.36
TRIM28-213ENST00000598355 PHLPP1O60346 1717 aa23.55■■□□□ 1.36
TRIM28-213ENST00000598355 COL16A1Q07092 1604 aaPredicted RBP23.55■■□□□ 1.36
TRIM28-213ENST00000598355 NHSL1Q5SYE7 1610 aa23.55■■□□□ 1.36
TRIM28-213ENST00000598355 C14orf37Q86TY3 774 aa23.54■■□□□ 1.36
TRIM28-213ENST00000598355 CFAP70Q5T0N1 1121 aa23.53■■□□□ 1.36
TRIM28-213ENST00000598355 DCAF11Q8TEB1 546 aa23.53■■□□□ 1.36
TRIM28-213ENST00000598355 ATF3P18847 181 aa23.52■■□□□ 1.36
TRIM28-213ENST00000598355 TMEM132EQ6IEE7 984 aa23.52■■□□□ 1.36
TRIM28-213ENST00000598355 ARHGEF28Q8N1W1 1705 aaKnown RBP23.51■■□□□ 1.35
TRIM28-213ENST00000598355 FMN2Q9NZ56 1722 aa23.5■■□□□ 1.35
TRIM28-213ENST00000598355 ADGRB2O60241 1585 aa23.49■■□□□ 1.35
TRIM28-213ENST00000598355 SIRT1Q96EB6 747 aa23.49■■□□□ 1.35
TRIM28-213ENST00000598355 MED1Q15648 1581 aaPredicted RBP23.48■■□□□ 1.35
TRIM28-213ENST00000598355 PLEKHH1Q9ULM0 1364 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms