RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.97■■□□□ 1.59
USHBP1-208ENST00000598309 ACIN1Q9UKV3 1341 aaKnown RBP24.95■■□□□ 1.58
USHBP1-208ENST00000598309 SLC4A1APQ9BWU0 796 aaKnown RBP24.95■■□□□ 1.58
USHBP1-208ENST00000598309 LRRC7Q96NW7 1537 aa24.95■■□□□ 1.58
USHBP1-208ENST00000598309 PPP1R15AO75807 674 aaPredicted RBP24.94■■□□□ 1.58
USHBP1-208ENST00000598309 UBAP1LF5GYI3 381 aa24.93■■□□□ 1.58
USHBP1-208ENST00000598309 CLTCL1P53675 1640 aa24.93■■□□□ 1.58
USHBP1-208ENST00000598309 SETD5Q9C0A6 1442 aa24.91■■□□□ 1.58
USHBP1-208ENST00000598309 SLC26A8Q96RN1 970 aa24.9■■□□□ 1.58
USHBP1-208ENST00000598309 NWD1Q149M9 1564 aa24.88■■□□□ 1.57
USHBP1-208ENST00000598309 KCNA6P17658 529 aa24.88■■□□□ 1.57
USHBP1-208ENST00000598309 BCANQ96GW7 911 aa24.88■■□□□ 1.57
USHBP1-208ENST00000598309 NKTRP30414 1462 aaKnown RBP24.87■■□□□ 1.57
USHBP1-208ENST00000598309 DIP2AQ14689 1571 aa24.87■■□□□ 1.57
USHBP1-208ENST00000598309 TOM1O60784 492 aa24.86■■□□□ 1.57
USHBP1-208ENST00000598309 TBX22Q9Y458 520 aa24.85■■□□□ 1.57
USHBP1-208ENST00000598309 ADAMTS13Q76LX8 1427 aa24.85■■□□□ 1.57
USHBP1-208ENST00000598309 NUTM2DQ5VT03 806 aaPredicted RBP24.83■■□□□ 1.57
USHBP1-208ENST00000598309 MPHOSPH9Q99550 1183 aa24.83■■□□□ 1.57
USHBP1-208ENST00000598309 KIF1BO60333 1816 aa24.82■■□□□ 1.56
USHBP1-208ENST00000598309 ZNF326Q5BKZ1 582 aaKnown RBP24.82■■□□□ 1.56
USHBP1-208ENST00000598309 PIK3R4Q99570 1358 aa24.81■■□□□ 1.56
USHBP1-208ENST00000598309 ALKQ9UM73 1620 aa24.81■■□□□ 1.56
USHBP1-208ENST00000598309 NEXMIFQ5QGS0 1516 aa24.81■■□□□ 1.56
USHBP1-208ENST00000598309 RAB3GAP2Q9H2M9 1393 aa24.8■■□□□ 1.56
USHBP1-208ENST00000598309 SETBP1Q9Y6X0 1596 aa24.8■■□□□ 1.56
USHBP1-208ENST00000598309 TMEM94Q12767 1356 aa24.79■■□□□ 1.56
USHBP1-208ENST00000598309 CHD2O14647 1828 aaKnown RBP24.77■■□□□ 1.56
USHBP1-208ENST00000598309 XIRP1Q702N8 1843 aaKnown RBP24.77■■□□□ 1.56
USHBP1-208ENST00000598309 SENP3Q9H4L4 574 aaPredicted RBP24.77■■□□□ 1.56
USHBP1-208ENST00000598309 CCDC144AA2RUR9 1427 aa24.77■■□□□ 1.56
USHBP1-208ENST00000598309 FOXD1Q16676 465 aa24.76■■□□□ 1.55
USHBP1-208ENST00000598309 NRXN3Q9Y4C0 1643 aa24.75■■□□□ 1.55
USHBP1-208ENST00000598309 PROSER2Q86WR7 435 aaPredicted RBP24.75■■□□□ 1.55
USHBP1-208ENST00000598309 RPGRIP1LQ68CZ1 1315 aa24.75■■□□□ 1.55
USHBP1-208ENST00000598309 PIP4K2BP78356 416 aa24.73■■□□□ 1.55
USHBP1-208ENST00000598309 SCAF1Q9H7N4 1312 aaKnown RBP24.72■■□□□ 1.55
USHBP1-208ENST00000598309 HRCP23327 699 aa24.71■■□□□ 1.55
USHBP1-208ENST00000598309 NCOA3Q9Y6Q9 1424 aa24.7■■□□□ 1.55
USHBP1-208ENST00000598309 VGFO15240 615 aaPredicted RBP24.69■■□□□ 1.54
USHBP1-208ENST00000598309 SPATA31E1Q6ZUB1 1445 aa24.69■■□□□ 1.54
USHBP1-208ENST00000598309 PTPRUQ92729 1446 aa24.67■■□□□ 1.54
USHBP1-208ENST00000598309 MSH6P52701 1360 aa24.67■■□□□ 1.54
USHBP1-208ENST00000598309 PPLO60437 1756 aa24.66■■□□□ 1.54
USHBP1-208ENST00000598309 XRN1Q8IZH2 1706 aaKnown RBP24.66■■□□□ 1.54
USHBP1-208ENST00000598309 HSPA1LP34931 641 aa24.64■■□□□ 1.54
USHBP1-208ENST00000598309 RBM33Q96EV2 1170 aaKnown RBP24.64■■□□□ 1.54
USHBP1-208ENST00000598309 AMOTL2Q9Y2J4 779 aa24.64■■□□□ 1.54
USHBP1-208ENST00000598309 METP08581 1390 aa24.64■■□□□ 1.53
USHBP1-208ENST00000598309 ANKRD30BQ9BXX2 1392 aa24.61■■□□□ 1.53
USHBP1-208ENST00000598309 FAM135BQ49AJ0 1406 aa24.61■■□□□ 1.53
USHBP1-208ENST00000598309 SETD1AO15047 1707 aaKnown RBP24.59■■□□□ 1.53
USHBP1-208ENST00000598309 IFT172Q9UG01 1749 aa24.58■■□□□ 1.52
USHBP1-208ENST00000598309 RGL3Q3MIN7 710 aa24.57■■□□□ 1.52
USHBP1-208ENST00000598309 PRAG1Q86YV5 1406 aa24.56■■□□□ 1.52
USHBP1-208ENST00000598309 C14orf37Q86TY3 774 aa24.55■■□□□ 1.52
USHBP1-208ENST00000598309 C19orf44Q9H6X5 657 aa24.55■■□□□ 1.52
USHBP1-208ENST00000598309 PTCH1Q13635 1447 aa24.54■■□□□ 1.52
USHBP1-208ENST00000598309 DCCP43146 1447 aa24.53■■□□□ 1.52
USHBP1-208ENST00000598309 ADGRF5Q8IZF2 1346 aa24.53■■□□□ 1.52
USHBP1-208ENST00000598309 CADPS2Q86UW7 1296 aa24.52■■□□□ 1.52
USHBP1-208ENST00000598309 ROBO1Q9Y6N7 1651 aa24.52■■□□□ 1.52
USHBP1-208ENST00000598309 SLAIN2Q9P270 581 aa24.51■■□□□ 1.51
USHBP1-208ENST00000598309 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.51■■□□□ 1.51
USHBP1-208ENST00000598309 PIK3C2GO75747 1445 aa24.51■■□□□ 1.51
USHBP1-208ENST00000598309 MYOM2P54296 1465 aa24.5■■□□□ 1.51
USHBP1-208ENST00000598309 ATF3P18847 181 aa24.49■■□□□ 1.51
USHBP1-208ENST00000598309 ADGRL3Q9HAR2 1447 aa24.48■■□□□ 1.51
USHBP1-208ENST00000598309 NRXN1Q9ULB1 1477 aa24.48■■□□□ 1.51
USHBP1-208ENST00000598309 DISP3Q9P2K9 1392 aa24.47■■□□□ 1.51
USHBP1-208ENST00000598309 ROBO2Q9HCK4 1378 aa24.45■■□□□ 1.5
USHBP1-208ENST00000598309 TECPR2O15040 1411 aa24.43■■□□□ 1.5
USHBP1-208ENST00000598309 ASXL1Q8IXJ9 1541 aa24.42■■□□□ 1.5
USHBP1-208ENST00000598309 MED1Q15648 1581 aaPredicted RBP24.42■■□□□ 1.5
USHBP1-208ENST00000598309 NALCNQ8IZF0 1738 aa24.41■■□□□ 1.5
USHBP1-208ENST00000598309 LAMC1P11047 1609 aa24.41■■□□□ 1.5
USHBP1-208ENST00000598309 LRPPRCP42704 1394 aaKnown RBP24.41■■□□□ 1.5
USHBP1-208ENST00000598309 MST1RQ04912 1400 aa24.4■■□□□ 1.5
USHBP1-208ENST00000598309 C14orf93Q9H972 538 aaKnown RBP24.39■■□□□ 1.49
USHBP1-208ENST00000598309 ABCC11Q96J66 1382 aa24.38■■□□□ 1.49
USHBP1-208ENST00000598309 STAC3Q96MF2 364 aa24.37■■□□□ 1.49
USHBP1-208ENST00000598309 KNDC1Q76NI1 1749 aa24.37■■□□□ 1.49
USHBP1-208ENST00000598309 AHDC1Q5TGY3 1603 aaPredicted RBP24.36■■□□□ 1.49
USHBP1-208ENST00000598309 YTHDC2Q9H6S0 1430 aaKnown RBP24.35■■□□□ 1.49
USHBP1-208ENST00000598309 PHLPP1O60346 1717 aa24.35■■□□□ 1.49
USHBP1-208ENST00000598309 BRINP3Q76B58 766 aa24.34■■□□□ 1.49
USHBP1-208ENST00000598309 COL16A1Q07092 1604 aaPredicted RBP24.33■■□□□ 1.49
USHBP1-208ENST00000598309 TMEM132EQ6IEE7 984 aa24.33■■□□□ 1.49
USHBP1-208ENST00000598309 CFAP70Q5T0N1 1121 aa24.31■■□□□ 1.48
USHBP1-208ENST00000598309 CDC42BPGQ6DT37 1551 aa24.31■■□□□ 1.48
USHBP1-208ENST00000598309 STK26Q9P289 416 aa24.31■■□□□ 1.48
USHBP1-208ENST00000598309 DHX57Q6P158 1386 aaKnown RBP24.3■■□□□ 1.48
USHBP1-208ENST00000598309 DCAF11Q8TEB1 546 aa24.3■■□□□ 1.48
USHBP1-208ENST00000598309 SIRT1Q96EB6 747 aa24.3■■□□□ 1.48
USHBP1-208ENST00000598309 JCADQ9P266 1359 aa24.29■■□□□ 1.48
USHBP1-208ENST00000598309 C1orf167Q5SNV9 1468 aa24.29■■□□□ 1.48
USHBP1-208ENST00000598309 ADGRB1O14514 1584 aa24.27■■□□□ 1.48
USHBP1-208ENST00000598309 NHSL1Q5SYE7 1610 aa24.26■■□□□ 1.47
USHBP1-208ENST00000598309 WAPLQ7Z5K2 1190 aa24.25■■□□□ 1.47
USHBP1-208ENST00000598309 KDM2AQ9Y2K7 1162 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms