RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 FOXD1Q16676 465 aa20.59■□□□□ 0.89
UPF1-205ENST00000598209 STRCP1A6NGW2 1772 aa20.57■□□□□ 0.88
UPF1-205ENST00000598209 HDGFP51858 240 aaKnown RBP20.57■□□□□ 0.88
UPF1-205ENST00000598209 ILDR1Q86SU0 546 aaPredicted RBP20.56■□□□□ 0.88
UPF1-205ENST00000598209 FBXO41Q8TF61 875 aa20.56■□□□□ 0.88
UPF1-205ENST00000598209 CPS1P31327 1500 aa20.55■□□□□ 0.88
UPF1-205ENST00000598209 PPP1R15AO75807 674 aaPredicted RBP20.55■□□□□ 0.88
UPF1-205ENST00000598209 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.55■□□□□ 0.88
UPF1-205ENST00000598209 PLEKHG1Q9ULL1 1385 aa20.54■□□□□ 0.88
UPF1-205ENST00000598209 IQSEC2Q5JU85 1478 aa20.54■□□□□ 0.88
UPF1-205ENST00000598209 HRCP23327 699 aa20.53■□□□□ 0.88
UPF1-205ENST00000598209 ZNF326Q5BKZ1 582 aaKnown RBP20.53■□□□□ 0.88
UPF1-205ENST00000598209 NUTM2DQ5VT03 806 aaPredicted RBP20.53■□□□□ 0.88
UPF1-205ENST00000598209 BCANQ96GW7 911 aa20.52■□□□□ 0.88
UPF1-205ENST00000598209 SENP3Q9H4L4 574 aaPredicted RBP20.52■□□□□ 0.88
UPF1-205ENST00000598209 SLC26A8Q96RN1 970 aa20.51■□□□□ 0.87
UPF1-205ENST00000598209 NEXMIFQ5QGS0 1516 aa20.5■□□□□ 0.87
UPF1-205ENST00000598209 CCDC144AA2RUR9 1427 aa20.5■□□□□ 0.87
UPF1-205ENST00000598209 PPLO60437 1756 aa20.46■□□□□ 0.87
UPF1-205ENST00000598209 DIP2AQ14689 1571 aa20.46■□□□□ 0.87
UPF1-205ENST00000598209 CHD2O14647 1828 aaKnown RBP20.46■□□□□ 0.87
UPF1-205ENST00000598209 ADAMTS13Q76LX8 1427 aa20.44■□□□□ 0.86
UPF1-205ENST00000598209 LRRC7Q96NW7 1537 aa20.44■□□□□ 0.86
UPF1-205ENST00000598209 NRXN3Q9Y4C0 1643 aa20.44■□□□□ 0.86
UPF1-205ENST00000598209 NWD1Q149M9 1564 aa20.43■□□□□ 0.86
UPF1-205ENST00000598209 SETBP1Q9Y6X0 1596 aa20.43■□□□□ 0.86
UPF1-205ENST00000598209 TBX22Q9Y458 520 aa20.43■□□□□ 0.86
UPF1-205ENST00000598209 XIRP1Q702N8 1843 aaKnown RBP20.43■□□□□ 0.86
UPF1-205ENST00000598209 KCNA6P17658 529 aa20.42■□□□□ 0.86
UPF1-205ENST00000598209 RPGRIP1LQ68CZ1 1315 aa20.41■□□□□ 0.86
UPF1-205ENST00000598209 SPATA31E1Q6ZUB1 1445 aa20.41■□□□□ 0.86
UPF1-205ENST00000598209 IFT172Q9UG01 1749 aa20.4■□□□□ 0.86
UPF1-205ENST00000598209 ANKRD30BQ9BXX2 1392 aa20.39■□□□□ 0.85
UPF1-205ENST00000598209 NKTRP30414 1462 aaKnown RBP20.38■□□□□ 0.85
UPF1-205ENST00000598209 VGFO15240 615 aaPredicted RBP20.38■□□□□ 0.85
UPF1-205ENST00000598209 RGL3Q3MIN7 710 aa20.38■□□□□ 0.85
UPF1-205ENST00000598209 UBAP1LF5GYI3 381 aa20.37■□□□□ 0.85
UPF1-205ENST00000598209 PIK3R4Q99570 1358 aa20.36■□□□□ 0.85
UPF1-205ENST00000598209 TRIM26Q12899 539 aaPredicted RBP20.36■□□□□ 0.85
UPF1-205ENST00000598209 SETD1AO15047 1707 aaKnown RBP20.34■□□□□ 0.85
UPF1-205ENST00000598209 PROSER2Q86WR7 435 aaPredicted RBP20.34■□□□□ 0.85
UPF1-205ENST00000598209 TMEM94Q12767 1356 aa20.34■□□□□ 0.85
UPF1-205ENST00000598209 PTPRUQ92729 1446 aa20.32■□□□□ 0.84
UPF1-205ENST00000598209 XRN1Q8IZH2 1706 aaKnown RBP20.32■□□□□ 0.84
UPF1-205ENST00000598209 ALKQ9UM73 1620 aa20.31■□□□□ 0.84
UPF1-205ENST00000598209 TOM1O60784 492 aa20.31■□□□□ 0.84
UPF1-205ENST00000598209 METP08581 1390 aa20.31■□□□□ 0.84
UPF1-205ENST00000598209 RBM33Q96EV2 1170 aaKnown RBP20.3■□□□□ 0.84
UPF1-205ENST00000598209 ADGRF5Q8IZF2 1346 aa20.29■□□□□ 0.84
UPF1-205ENST00000598209 AMOTL2Q9Y2J4 779 aa20.29■□□□□ 0.84
UPF1-205ENST00000598209 PIP4K2BP78356 416 aa20.26■□□□□ 0.83
UPF1-205ENST00000598209 SCAF1Q9H7N4 1312 aaKnown RBP20.26■□□□□ 0.83
UPF1-205ENST00000598209 PIK3C2GO75747 1445 aa20.25■□□□□ 0.83
UPF1-205ENST00000598209 MYOM2P54296 1465 aa20.24■□□□□ 0.83
UPF1-205ENST00000598209 NCOA3Q9Y6Q9 1424 aa20.23■□□□□ 0.83
UPF1-205ENST00000598209 MSH6P52701 1360 aa20.22■□□□□ 0.83
UPF1-205ENST00000598209 NRXN1Q9ULB1 1477 aa20.22■□□□□ 0.83
UPF1-205ENST00000598209 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.21■□□□□ 0.83
UPF1-205ENST00000598209 C14orf37Q86TY3 774 aa20.2■□□□□ 0.82
UPF1-205ENST00000598209 LAMC1P11047 1609 aa20.2■□□□□ 0.82
UPF1-205ENST00000598209 ASXL1Q8IXJ9 1541 aa20.18■□□□□ 0.82
UPF1-205ENST00000598209 DHX57Q6P158 1386 aaKnown RBP20.18■□□□□ 0.82
UPF1-205ENST00000598209 DCAF11Q8TEB1 546 aa20.17■□□□□ 0.82
UPF1-205ENST00000598209 PTCH1Q13635 1447 aa20.17■□□□□ 0.82
UPF1-205ENST00000598209 PRAG1Q86YV5 1406 aa20.17■□□□□ 0.82
UPF1-205ENST00000598209 KDM2AQ9Y2K7 1162 aa20.16■□□□□ 0.82
UPF1-205ENST00000598209 KNDC1Q76NI1 1749 aa20.16■□□□□ 0.82
UPF1-205ENST00000598209 NALCNQ8IZF0 1738 aa20.16■□□□□ 0.82
UPF1-205ENST00000598209 C19orf44Q9H6X5 657 aa20.15■□□□□ 0.82
UPF1-205ENST00000598209 C14orf93Q9H972 538 aaKnown RBP20.15■□□□□ 0.82
UPF1-205ENST00000598209 ROBO2Q9HCK4 1378 aa20.15■□□□□ 0.82
UPF1-205ENST00000598209 CFAP70Q5T0N1 1121 aa20.14■□□□□ 0.81
UPF1-205ENST00000598209 TMEM132EQ6IEE7 984 aa20.14■□□□□ 0.81
UPF1-205ENST00000598209 STAC3Q96MF2 364 aa20.14■□□□□ 0.81
UPF1-205ENST00000598209 ROBO1Q9Y6N7 1651 aa20.13■□□□□ 0.81
UPF1-205ENST00000598209 LRPPRCP42704 1394 aaKnown RBP20.13■□□□□ 0.81
UPF1-205ENST00000598209 HSPA1LP34931 641 aa20.13■□□□□ 0.81
UPF1-205ENST00000598209 ADGRL3Q9HAR2 1447 aa20.12■□□□□ 0.81
UPF1-205ENST00000598209 STK26Q9P289 416 aa20.12■□□□□ 0.81
UPF1-205ENST00000598209 DCCP43146 1447 aa20.11■□□□□ 0.81
UPF1-205ENST00000598209 FAM135BQ49AJ0 1406 aa20.11■□□□□ 0.81
UPF1-205ENST00000598209 ATF3P18847 181 aa20.11■□□□□ 0.81
UPF1-205ENST00000598209 CADPS2Q86UW7 1296 aa20.11■□□□□ 0.81
UPF1-205ENST00000598209 SLAIN2Q9P270 581 aa20.11■□□□□ 0.81
UPF1-205ENST00000598209 TECPR2O15040 1411 aa20.1■□□□□ 0.81
UPF1-205ENST00000598209 YTHDC2Q9H6S0 1430 aaKnown RBP20.1■□□□□ 0.81
UPF1-205ENST00000598209 SIN3AQ96ST3 1273 aa20.1■□□□□ 0.81
UPF1-205ENST00000598209 ABCC11Q96J66 1382 aa20.09■□□□□ 0.81
UPF1-205ENST00000598209 NEUROD1Q13562 356 aa20.07■□□□□ 0.8
UPF1-205ENST00000598209 ADGRB1O14514 1584 aa20.07■□□□□ 0.8
UPF1-205ENST00000598209 KIAA1210Q9ULL0 1709 aa20.05■□□□□ 0.8
UPF1-205ENST00000598209 MST1RQ04912 1400 aa20.04■□□□□ 0.8
UPF1-205ENST00000598209 WAPLQ7Z5K2 1190 aa20.04■□□□□ 0.8
UPF1-205ENST00000598209 PCGF6Q9BYE7 350 aa20.04■□□□□ 0.8
UPF1-205ENST00000598209 PLEKHH1Q9ULM0 1364 aa20.03■□□□□ 0.8
UPF1-205ENST00000598209 PHLPP1O60346 1717 aa20.02■□□□□ 0.8
UPF1-205ENST00000598209 L3MBTL2Q969R5 705 aa20.02■□□□□ 0.8
UPF1-205ENST00000598209 DLC1Q96QB1 1528 aa20.02■□□□□ 0.79
UPF1-205ENST00000598209 CDC42BPGQ6DT37 1551 aa20.01■□□□□ 0.79
UPF1-205ENST00000598209 SIRT1Q96EB6 747 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms