RNA–Protein interactions for RNA: ENST00000595631.5

SHKBP1-207, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-207ENST00000595631 SENP3Q9H4L4 574 aaPredicted RBP20.41■□□□□ 0.86
SHKBP1-207ENST00000595631 EID1Q9Y6B2 187 aa20.41■□□□□ 0.86
SHKBP1-207ENST00000595631 LTBP4Q8N2S1 1624 aa20.41■□□□□ 0.86
SHKBP1-207ENST00000595631 NUTM2DQ5VT03 806 aaPredicted RBP20.4■□□□□ 0.86
SHKBP1-207ENST00000595631 NEXMIFQ5QGS0 1516 aa20.39■□□□□ 0.85
SHKBP1-207ENST00000595631 ZNF335Q9H4Z2 1342 aaPredicted RBP20.39■□□□□ 0.85
SHKBP1-207ENST00000595631 PPLO60437 1756 aa20.39■□□□□ 0.85
SHKBP1-207ENST00000595631 CCDC144AA2RUR9 1427 aa20.37■□□□□ 0.85
SHKBP1-207ENST00000595631 IFT172Q9UG01 1749 aa20.36■□□□□ 0.85
SHKBP1-207ENST00000595631 ZNF326Q5BKZ1 582 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-207ENST00000595631 PPP1R15AO75807 674 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-207ENST00000595631 NRXN3Q9Y4C0 1643 aa20.34■□□□□ 0.85
SHKBP1-207ENST00000595631 PLEKHG1Q9ULL1 1385 aa20.33■□□□□ 0.84
SHKBP1-207ENST00000595631 ANKRD30BQ9BXX2 1392 aa20.32■□□□□ 0.84
SHKBP1-207ENST00000595631 SPATA31E1Q6ZUB1 1445 aa20.31■□□□□ 0.84
SHKBP1-207ENST00000595631 SLC26A8Q96RN1 970 aa20.31■□□□□ 0.84
SHKBP1-207ENST00000595631 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.3■□□□□ 0.84
SHKBP1-207ENST00000595631 BCANQ96GW7 911 aa20.3■□□□□ 0.84
SHKBP1-207ENST00000595631 CHD2O14647 1828 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-207ENST00000595631 HDGFP51858 240 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-207ENST00000595631 CERKQ8TCT0 537 aa20.28■□□□□ 0.84
SHKBP1-207ENST00000595631 SETBP1Q9Y6X0 1596 aa20.28■□□□□ 0.84
SHKBP1-207ENST00000595631 ADAMTS13Q76LX8 1427 aa20.27■□□□□ 0.84
SHKBP1-207ENST00000595631 XIRP1Q702N8 1843 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-207ENST00000595631 RGL3Q3MIN7 710 aa20.27■□□□□ 0.84
SHKBP1-207ENST00000595631 SETD1AO15047 1707 aaKnown RBP20.27■□□□□ 0.83
SHKBP1-207ENST00000595631 DIP2AQ14689 1571 aa20.26■□□□□ 0.83
SHKBP1-207ENST00000595631 CPS1P31327 1500 aa20.26■□□□□ 0.83
SHKBP1-207ENST00000595631 NWD1Q149M9 1564 aa20.25■□□□□ 0.83
SHKBP1-207ENST00000595631 RPGRIP1LQ68CZ1 1315 aa20.21■□□□□ 0.83
SHKBP1-207ENST00000595631 DHX57Q6P158 1386 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-207ENST00000595631 PCGF6Q9BYE7 350 aa20.2■□□□□ 0.82
SHKBP1-207ENST00000595631 LRRC7Q96NW7 1537 aa20.2■□□□□ 0.82
SHKBP1-207ENST00000595631 ALKQ9UM73 1620 aa20.19■□□□□ 0.82
SHKBP1-207ENST00000595631 TBX22Q9Y458 520 aa20.18■□□□□ 0.82
SHKBP1-207ENST00000595631 ADGRF5Q8IZF2 1346 aa20.18■□□□□ 0.82
SHKBP1-207ENST00000595631 XRN1Q8IZH2 1706 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-207ENST00000595631 IQSEC2Q5JU85 1478 aa20.18■□□□□ 0.82
SHKBP1-207ENST00000595631 VGFO15240 615 aaPredicted RBP20.17■□□□□ 0.82
SHKBP1-207ENST00000595631 PTPRUQ92729 1446 aa20.17■□□□□ 0.82
SHKBP1-207ENST00000595631 KCNA6P17658 529 aa20.16■□□□□ 0.82
SHKBP1-207ENST00000595631 METP08581 1390 aa20.15■□□□□ 0.82
SHKBP1-207ENST00000595631 NKTRP30414 1462 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-207ENST00000595631 MYOM2P54296 1465 aa20.14■□□□□ 0.81
SHKBP1-207ENST00000595631 RBM33Q96EV2 1170 aaKnown RBP20.13■□□□□ 0.81
SHKBP1-207ENST00000595631 PIK3C2GO75747 1445 aa20.12■□□□□ 0.81
SHKBP1-207ENST00000595631 NRXN1Q9ULB1 1477 aa20.11■□□□□ 0.81
SHKBP1-207ENST00000595631 PIK3R4Q99570 1358 aa20.11■□□□□ 0.81
SHKBP1-207ENST00000595631 SIN3AQ96ST3 1273 aa20.11■□□□□ 0.81
SHKBP1-207ENST00000595631 ASXL1Q8IXJ9 1541 aa20.11■□□□□ 0.81
SHKBP1-207ENST00000595631 ILDR1Q86SU0 546 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-207ENST00000595631 FBXO41Q8TF61 875 aa20.1■□□□□ 0.81
SHKBP1-207ENST00000595631 LAMC1P11047 1609 aa20.09■□□□□ 0.81
SHKBP1-207ENST00000595631 PROSER2Q86WR7 435 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-207ENST00000595631 TMEM94Q12767 1356 aa20.08■□□□□ 0.81
SHKBP1-207ENST00000595631 AMOTL2Q9Y2J4 779 aa20.08■□□□□ 0.81
SHKBP1-207ENST00000595631 KDM2AQ9Y2K7 1162 aa20.08■□□□□ 0.81
SHKBP1-207ENST00000595631 DCAF11Q8TEB1 546 aa20.07■□□□□ 0.8
SHKBP1-207ENST00000595631 NEUROD1Q13562 356 aa20.05■□□□□ 0.8
SHKBP1-207ENST00000595631 KNDC1Q76NI1 1749 aa20.05■□□□□ 0.8
SHKBP1-207ENST00000595631 NALCNQ8IZF0 1738 aa20.05■□□□□ 0.8
SHKBP1-207ENST00000595631 UBAP1LF5GYI3 381 aa20.04■□□□□ 0.8
SHKBP1-207ENST00000595631 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-207ENST00000595631 CFAP70Q5T0N1 1121 aa20.02■□□□□ 0.8
SHKBP1-207ENST00000595631 TMEM132EQ6IEE7 984 aa20.02■□□□□ 0.8
SHKBP1-207ENST00000595631 C14orf93Q9H972 538 aaKnown RBP20■□□□□ 0.79
SHKBP1-207ENST00000595631 ROBO2Q9HCK4 1378 aa19.99■□□□□ 0.79
SHKBP1-207ENST00000595631 KIAA1210Q9ULL0 1709 aa19.99■□□□□ 0.79
SHKBP1-207ENST00000595631 L3MBTL2Q969R5 705 aa19.98■□□□□ 0.79
SHKBP1-207ENST00000595631 STK26Q9P289 416 aa19.98■□□□□ 0.79
SHKBP1-207ENST00000595631 PTCH1Q13635 1447 aa19.98■□□□□ 0.79
SHKBP1-207ENST00000595631 ADGRB1O14514 1584 aa19.98■□□□□ 0.79
SHKBP1-207ENST00000595631 PRAG1Q86YV5 1406 aa19.97■□□□□ 0.79
SHKBP1-207ENST00000595631 YTHDC2Q9H6S0 1430 aaKnown RBP19.97■□□□□ 0.79
SHKBP1-207ENST00000595631 MSH6P52701 1360 aa19.96■□□□□ 0.79
SHKBP1-207ENST00000595631 PIP4K2BP78356 416 aa19.96■□□□□ 0.79
SHKBP1-207ENST00000595631 C14orf37Q86TY3 774 aa19.96■□□□□ 0.79
SHKBP1-207ENST00000595631 SCAF1Q9H7N4 1312 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-207ENST00000595631 LRPPRCP42704 1394 aaKnown RBP19.95■□□□□ 0.79
SHKBP1-207ENST00000595631 TOM1O60784 492 aa19.95■□□□□ 0.78
SHKBP1-207ENST00000595631 NCOA3Q9Y6Q9 1424 aa19.94■□□□□ 0.78
SHKBP1-207ENST00000595631 TECPR2O15040 1411 aa19.93■□□□□ 0.78
SHKBP1-207ENST00000595631 STAC3Q96MF2 364 aa19.93■□□□□ 0.78
SHKBP1-207ENST00000595631 TRPM1Q7Z4N2 1603 aa19.93■□□□□ 0.78
SHKBP1-207ENST00000595631 ROBO1Q9Y6N7 1651 aa19.93■□□□□ 0.78
SHKBP1-207ENST00000595631 ARHGEF28Q8N1W1 1705 aaKnown RBP19.93■□□□□ 0.78
SHKBP1-207ENST00000595631 ADGRL3Q9HAR2 1447 aa19.93■□□□□ 0.78
SHKBP1-207ENST00000595631 PLEKHH1Q9ULM0 1364 aa19.92■□□□□ 0.78
SHKBP1-207ENST00000595631 ABCC11Q96J66 1382 aa19.91■□□□□ 0.78
SHKBP1-207ENST00000595631 WAPLQ7Z5K2 1190 aa19.9■□□□□ 0.78
SHKBP1-207ENST00000595631 TONSLQ96HA7 1378 aa19.88■□□□□ 0.77
SHKBP1-207ENST00000595631 C19orf44Q9H6X5 657 aa19.88■□□□□ 0.77
SHKBP1-207ENST00000595631 DLC1Q96QB1 1528 aa19.87■□□□□ 0.77
SHKBP1-207ENST00000595631 NBPF1Q3BBV0 1214 aa19.86■□□□□ 0.77
SHKBP1-207ENST00000595631 DCCP43146 1447 aa19.85■□□□□ 0.77
SHKBP1-207ENST00000595631 ATF3P18847 181 aa19.85■□□□□ 0.77
SHKBP1-207ENST00000595631 TRAK1Q9UPV9 953 aa19.85■□□□□ 0.77
SHKBP1-207ENST00000595631 CDC42BPGQ6DT37 1551 aa19.85■□□□□ 0.77
SHKBP1-207ENST00000595631 RGPD8O14715 1765 aaPredicted RBP19.85■□□□□ 0.77
SHKBP1-207ENST00000595631 FAM135BQ49AJ0 1406 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms