RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 XIRP1Q702N8 1843 aaKnown RBP16.47■□□□□ 0.23
SHKBP1-206ENST00000595523 SLC4A1APQ9BWU0 796 aaKnown RBP16.47■□□□□ 0.23
SHKBP1-206ENST00000595523 RAB3GAP2Q9H2M9 1393 aa16.46■□□□□ 0.23
SHKBP1-206ENST00000595523 CHGAP10645 457 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-206ENST00000595523 CHD2O14647 1828 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-206ENST00000595523 PLEKHG1Q9ULL1 1385 aa16.43■□□□□ 0.22
SHKBP1-206ENST00000595523 FOXD1Q16676 465 aa16.43■□□□□ 0.22
SHKBP1-206ENST00000595523 NRXN3Q9Y4C0 1643 aa16.43■□□□□ 0.22
SHKBP1-206ENST00000595523 NEXMIFQ5QGS0 1516 aa16.43■□□□□ 0.22
SHKBP1-206ENST00000595523 MPHOSPH9Q99550 1183 aa16.42■□□□□ 0.22
SHKBP1-206ENST00000595523 NWD1Q149M9 1564 aa16.42■□□□□ 0.22
SHKBP1-206ENST00000595523 PPLO60437 1756 aa16.41■□□□□ 0.22
SHKBP1-206ENST00000595523 LRRC7Q96NW7 1537 aa16.41■□□□□ 0.22
SHKBP1-206ENST00000595523 NUTM2DQ5VT03 806 aaPredicted RBP16.4■□□□□ 0.22
SHKBP1-206ENST00000595523 ADAMTS13Q76LX8 1427 aa16.39■□□□□ 0.21
SHKBP1-206ENST00000595523 ALKQ9UM73 1620 aa16.39■□□□□ 0.21
SHKBP1-206ENST00000595523 SLC26A8Q96RN1 970 aa16.39■□□□□ 0.21
SHKBP1-206ENST00000595523 IFT172Q9UG01 1749 aa16.39■□□□□ 0.21
SHKBP1-206ENST00000595523 DIP2AQ14689 1571 aa16.38■□□□□ 0.21
SHKBP1-206ENST00000595523 SENP3Q9H4L4 574 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-206ENST00000595523 SETBP1Q9Y6X0 1596 aa16.38■□□□□ 0.21
SHKBP1-206ENST00000595523 PPP1R15AO75807 674 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-206ENST00000595523 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.37■□□□□ 0.21
SHKBP1-206ENST00000595523 HDGFP51858 240 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-206ENST00000595523 ACIN1Q9UKV3 1341 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-206ENST00000595523 SETD1AO15047 1707 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-206ENST00000595523 ZNF326Q5BKZ1 582 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-206ENST00000595523 CCDC144AA2RUR9 1427 aa16.34■□□□□ 0.21
SHKBP1-206ENST00000595523 SPATA31E1Q6ZUB1 1445 aa16.34■□□□□ 0.21
SHKBP1-206ENST00000595523 NKTRP30414 1462 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-206ENST00000595523 BCANQ96GW7 911 aa16.33■□□□□ 0.2
SHKBP1-206ENST00000595523 KCNA6P17658 529 aa16.32■□□□□ 0.2
SHKBP1-206ENST00000595523 HRCP23327 699 aa16.32■□□□□ 0.2
SHKBP1-206ENST00000595523 XRN1Q8IZH2 1706 aaKnown RBP16.32■□□□□ 0.2
SHKBP1-206ENST00000595523 TBX22Q9Y458 520 aa16.31■□□□□ 0.2
SHKBP1-206ENST00000595523 UBAP1LF5GYI3 381 aa16.3■□□□□ 0.2
SHKBP1-206ENST00000595523 PTPRUQ92729 1446 aa16.29■□□□□ 0.2
SHKBP1-206ENST00000595523 TMEM94Q12767 1356 aa16.28■□□□□ 0.2
SHKBP1-206ENST00000595523 PIK3R4Q99570 1358 aa16.28■□□□□ 0.2
SHKBP1-206ENST00000595523 ANKRD30BQ9BXX2 1392 aa16.27■□□□□ 0.2
SHKBP1-206ENST00000595523 RPGRIP1LQ68CZ1 1315 aa16.26■□□□□ 0.19
SHKBP1-206ENST00000595523 METP08581 1390 aa16.26■□□□□ 0.19
SHKBP1-206ENST00000595523 RBM33Q96EV2 1170 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-206ENST00000595523 PROSER2Q86WR7 435 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-206ENST00000595523 TOM1O60784 492 aa16.23■□□□□ 0.19
SHKBP1-206ENST00000595523 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-206ENST00000595523 VGFO15240 615 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-206ENST00000595523 RGL3Q3MIN7 710 aa16.22■□□□□ 0.19
SHKBP1-206ENST00000595523 ADGRF5Q8IZF2 1346 aa16.21■□□□□ 0.19
SHKBP1-206ENST00000595523 ASXL1Q8IXJ9 1541 aa16.2■□□□□ 0.18
SHKBP1-206ENST00000595523 NALCNQ8IZF0 1738 aa16.2■□□□□ 0.18
SHKBP1-206ENST00000595523 PIP4K2BP78356 416 aa16.2■□□□□ 0.18
SHKBP1-206ENST00000595523 AMOTL2Q9Y2J4 779 aa16.2■□□□□ 0.18
SHKBP1-206ENST00000595523 NRXN1Q9ULB1 1477 aa16.2■□□□□ 0.18
SHKBP1-206ENST00000595523 PIK3C2GO75747 1445 aa16.19■□□□□ 0.18
SHKBP1-206ENST00000595523 MYOM2P54296 1465 aa16.19■□□□□ 0.18
SHKBP1-206ENST00000595523 NCOA3Q9Y6Q9 1424 aa16.19■□□□□ 0.18
SHKBP1-206ENST00000595523 ROBO1Q9Y6N7 1651 aa16.18■□□□□ 0.18
SHKBP1-206ENST00000595523 PRAG1Q86YV5 1406 aa16.18■□□□□ 0.18
SHKBP1-206ENST00000595523 SCAF1Q9H7N4 1312 aaKnown RBP16.18■□□□□ 0.18
SHKBP1-206ENST00000595523 KNDC1Q76NI1 1749 aa16.16■□□□□ 0.18
SHKBP1-206ENST00000595523 LAMC1P11047 1609 aa16.16■□□□□ 0.18
SHKBP1-206ENST00000595523 MSH6P52701 1360 aa16.16■□□□□ 0.18
SHKBP1-206ENST00000595523 PTCH1Q13635 1447 aa16.15■□□□□ 0.18
SHKBP1-206ENST00000595523 HSPA1LP34931 641 aa16.14■□□□□ 0.17
SHKBP1-206ENST00000595523 ROBO2Q9HCK4 1378 aa16.13■□□□□ 0.17
SHKBP1-206ENST00000595523 DHX57Q6P158 1386 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-206ENST00000595523 FAM135BQ49AJ0 1406 aa16.11■□□□□ 0.17
SHKBP1-206ENST00000595523 TRIM26Q12899 539 aaPredicted RBP16.11■□□□□ 0.17
SHKBP1-206ENST00000595523 TECPR2O15040 1411 aa16.11■□□□□ 0.17
SHKBP1-206ENST00000595523 DCCP43146 1447 aa16.11■□□□□ 0.17
SHKBP1-206ENST00000595523 ADGRL3Q9HAR2 1447 aa16.11■□□□□ 0.17
SHKBP1-206ENST00000595523 C19orf44Q9H6X5 657 aa16.1■□□□□ 0.17
SHKBP1-206ENST00000595523 C14orf37Q86TY3 774 aa16.09■□□□□ 0.17
SHKBP1-206ENST00000595523 ADGRB1O14514 1584 aa16.09■□□□□ 0.17
SHKBP1-206ENST00000595523 TMEM132EQ6IEE7 984 aa16.08■□□□□ 0.16
SHKBP1-206ENST00000595523 C14orf93Q9H972 538 aaKnown RBP16.08■□□□□ 0.16
SHKBP1-206ENST00000595523 SLAIN2Q9P270 581 aa16.08■□□□□ 0.16
SHKBP1-206ENST00000595523 LRPPRCP42704 1394 aaKnown RBP16.08■□□□□ 0.16
SHKBP1-206ENST00000595523 PHLPP1O60346 1717 aa16.08■□□□□ 0.16
SHKBP1-206ENST00000595523 YTHDC2Q9H6S0 1430 aaKnown RBP16.07■□□□□ 0.16
SHKBP1-206ENST00000595523 MST1RQ04912 1400 aa16.06■□□□□ 0.16
SHKBP1-206ENST00000595523 CFAP70Q5T0N1 1121 aa16.06■□□□□ 0.16
SHKBP1-206ENST00000595523 DCAF11Q8TEB1 546 aa16.06■□□□□ 0.16
SHKBP1-206ENST00000595523 ABCC11Q96J66 1382 aa16.05■□□□□ 0.16
SHKBP1-206ENST00000595523 CADPS2Q86UW7 1296 aa16.05■□□□□ 0.16
SHKBP1-206ENST00000595523 KIAA1210Q9ULL0 1709 aa16.05■□□□□ 0.16
SHKBP1-206ENST00000595523 COL16A1Q07092 1604 aaPredicted RBP16.05■□□□□ 0.16
SHKBP1-206ENST00000595523 CDC42BPGQ6DT37 1551 aa16.04■□□□□ 0.16
SHKBP1-206ENST00000595523 ATF3P18847 181 aa16.04■□□□□ 0.16
SHKBP1-206ENST00000595523 KDM2AQ9Y2K7 1162 aa16.04■□□□□ 0.16
SHKBP1-206ENST00000595523 NHSL1Q5SYE7 1610 aa16.04■□□□□ 0.16
SHKBP1-206ENST00000595523 AHDC1Q5TGY3 1603 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-206ENST00000595523 PLEKHH1Q9ULM0 1364 aa16.03■□□□□ 0.16
SHKBP1-206ENST00000595523 STK26Q9P289 416 aa16.03■□□□□ 0.16
SHKBP1-206ENST00000595523 MED1Q15648 1581 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-206ENST00000595523 ARHGEF28Q8N1W1 1705 aaKnown RBP16.02■□□□□ 0.15
SHKBP1-206ENST00000595523 DLC1Q96QB1 1528 aa16.01■□□□□ 0.15
SHKBP1-206ENST00000595523 WAPLQ7Z5K2 1190 aa16.01■□□□□ 0.15
SHKBP1-206ENST00000595523 FMN2Q9NZ56 1722 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms