RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-204ENST00000594828 RIMS2Q9UQ26 1411 aa35.51■■■■□ 3.28
LSM4-204ENST00000594828 MYO5BQ9ULV0 1848 aa35.51■■■■□ 3.28
LSM4-204ENST00000594828 PPP1R15AO75807 674 aaPredicted RBP35.51■■■■□ 3.28
LSM4-204ENST00000594828 KCNA6P17658 529 aa35.49■■■■□ 3.27
LSM4-204ENST00000594828 DISP3Q9P2K9 1392 aa35.49■■■■□ 3.27
LSM4-204ENST00000594828 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.47■■■■□ 3.27
LSM4-204ENST00000594828 SENP3Q9H4L4 574 aaPredicted RBP35.47■■■■□ 3.27
LSM4-204ENST00000594828 HSPA1LP34931 641 aa35.46■■■■□ 3.27
LSM4-204ENST00000594828 PLEKHG1Q9ULL1 1385 aa35.45■■■■□ 3.27
LSM4-204ENST00000594828 ALKQ9UM73 1620 aa35.44■■■■□ 3.26
LSM4-204ENST00000594828 NUTM2DQ5VT03 806 aaPredicted RBP35.4■■■■□ 3.26
LSM4-204ENST00000594828 HFM1A2PYH4 1435 aa35.4■■■■□ 3.26
LSM4-204ENST00000594828 PROSER2Q86WR7 435 aaPredicted RBP35.39■■■■□ 3.26
LSM4-204ENST00000594828 TRIM52Q96A61 297 aa35.38■■■■□ 3.25
LSM4-204ENST00000594828 TMEM94Q12767 1356 aa35.37■■■■□ 3.25
LSM4-204ENST00000594828 TBX22Q9Y458 520 aa35.36■■■■□ 3.25
LSM4-204ENST00000594828 XIRP1Q702N8 1843 aaKnown RBP35.36■■■■□ 3.25
LSM4-204ENST00000594828 SPHKAPQ2M3C7 1700 aa35.35■■■■□ 3.25
LSM4-204ENST00000594828 RBM33Q96EV2 1170 aaKnown RBP35.32■■■■□ 3.24
LSM4-204ENST00000594828 NWD1Q149M9 1564 aa35.3■■■■□ 3.24
LSM4-204ENST00000594828 NKTRP30414 1462 aaKnown RBP35.3■■■■□ 3.24
LSM4-204ENST00000594828 ZNF326Q5BKZ1 582 aaKnown RBP35.28■■■■□ 3.24
LSM4-204ENST00000594828 ADAMTS13Q76LX8 1427 aa35.26■■■■□ 3.24
LSM4-204ENST00000594828 SLC4A1APQ9BWU0 796 aaKnown RBP35.25■■■■□ 3.23
LSM4-204ENST00000594828 CHD2O14647 1828 aaKnown RBP35.25■■■■□ 3.23
LSM4-204ENST00000594828 TRPM2O94759 1503 aa35.22■■■■□ 3.23
LSM4-204ENST00000594828 ILDR2Q71H61 639 aa35.21■■■■□ 3.23
LSM4-204ENST00000594828 DIP2AQ14689 1571 aa35.2■■■■□ 3.23
LSM4-204ENST00000594828 CLTCL1P53675 1640 aa35.2■■■■□ 3.23
LSM4-204ENST00000594828 PIK3R4Q99570 1358 aa35.19■■■■□ 3.22
LSM4-204ENST00000594828 MSH6P52701 1360 aa35.17■■■■□ 3.22
LSM4-204ENST00000594828 FAM135BQ49AJ0 1406 aa35.16■■■■□ 3.22
LSM4-204ENST00000594828 AMOTL2Q9Y2J4 779 aa35.11■■■■□ 3.21
LSM4-204ENST00000594828 NCOA3Q9Y6Q9 1424 aa35.1■■■■□ 3.21
LSM4-204ENST00000594828 KIF1BO60333 1816 aa35.1■■■■□ 3.21
LSM4-204ENST00000594828 C14orf37Q86TY3 774 aa35.09■■■■□ 3.21
LSM4-204ENST00000594828 SLAIN2Q9P270 581 aa35.08■■■■□ 3.21
LSM4-204ENST00000594828 SETBP1Q9Y6X0 1596 aa35.08■■■■□ 3.21
LSM4-204ENST00000594828 MED1Q15648 1581 aaPredicted RBP35.07■■■■□ 3.2
LSM4-204ENST00000594828 PTPRUQ92729 1446 aa35.06■■■■□ 3.2
LSM4-204ENST00000594828 NEXMIFQ5QGS0 1516 aa35.06■■■■□ 3.2
LSM4-204ENST00000594828 FOXD1Q16676 465 aa35.06■■■■□ 3.2
LSM4-204ENST00000594828 NRXN3Q9Y4C0 1643 aa35.06■■■■□ 3.2
LSM4-204ENST00000594828 MPHOSPH9Q99550 1183 aa35.03■■■■□ 3.2
LSM4-204ENST00000594828 VGFO15240 615 aaPredicted RBP35.02■■■■□ 3.2
LSM4-204ENST00000594828 C19orf44Q9H6X5 657 aa35.02■■■■□ 3.2
LSM4-204ENST00000594828 ROBO1Q9Y6N7 1651 aa35.01■■■■□ 3.2
LSM4-204ENST00000594828 RPGRIP1LQ68CZ1 1315 aa35■■■■□ 3.19
LSM4-204ENST00000594828 METP08581 1390 aa35■■■■□ 3.19
LSM4-204ENST00000594828 ACIN1Q9UKV3 1341 aaKnown RBP34.98■■■■□ 3.19
LSM4-204ENST00000594828 CADPS2Q86UW7 1296 aa34.97■■■■□ 3.19
LSM4-204ENST00000594828 ATF3P18847 181 aa34.96■■■■□ 3.19
LSM4-204ENST00000594828 SETD5Q9C0A6 1442 aa34.95■■■■□ 3.19
LSM4-204ENST00000594828 SOCS7O14512 581 aa34.94■■■■□ 3.18
LSM4-204ENST00000594828 PHF23Q9BUL5 403 aaPredicted RBP34.94■■■■□ 3.18
LSM4-204ENST00000594828 XRN1Q8IZH2 1706 aaKnown RBP34.92■■■■□ 3.18
LSM4-204ENST00000594828 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.92■■■■□ 3.18
LSM4-204ENST00000594828 CCDC144AA2RUR9 1427 aa34.91■■■■□ 3.18
LSM4-204ENST00000594828 RGL3Q3MIN7 710 aa34.85■■■■□ 3.17
LSM4-204ENST00000594828 PPLO60437 1756 aa34.83■■■■□ 3.17
LSM4-204ENST00000594828 DCCP43146 1447 aa34.81■■■■□ 3.16
LSM4-204ENST00000594828 PHLPP1O60346 1717 aa34.81■■■■□ 3.16
LSM4-204ENST00000594828 RAB3GAP2Q9H2M9 1393 aa34.8■■■■□ 3.16
LSM4-204ENST00000594828 SPATA31E1Q6ZUB1 1445 aa34.79■■■■□ 3.16
LSM4-204ENST00000594828 SETD1AO15047 1707 aaKnown RBP34.76■■■■□ 3.16
LSM4-204ENST00000594828 ADGRF5Q8IZF2 1346 aa34.75■■■■□ 3.15
LSM4-204ENST00000594828 ADGRL3Q9HAR2 1447 aa34.74■■■■□ 3.15
LSM4-204ENST00000594828 BRINP3Q76B58 766 aa34.74■■■■□ 3.15
LSM4-204ENST00000594828 ANKRD30BQ9BXX2 1392 aa34.74■■■■□ 3.15
LSM4-204ENST00000594828 JCADQ9P266 1359 aa34.74■■■■□ 3.15
LSM4-204ENST00000594828 PTCH1Q13635 1447 aa34.72■■■■□ 3.15
LSM4-204ENST00000594828 ROBO2Q9HCK4 1378 aa34.71■■■■□ 3.15
LSM4-204ENST00000594828 MST1RQ04912 1400 aa34.7■■■■□ 3.15
LSM4-204ENST00000594828 COL16A1Q07092 1604 aaPredicted RBP34.7■■■■□ 3.14
LSM4-204ENST00000594828 RGS17Q9UGC6 210 aaPredicted RBP34.68■■■■□ 3.14
LSM4-204ENST00000594828 AHDC1Q5TGY3 1603 aaPredicted RBP34.67■■■■□ 3.14
LSM4-204ENST00000594828 PRAG1Q86YV5 1406 aa34.66■■■■□ 3.14
LSM4-204ENST00000594828 NALCNQ8IZF0 1738 aa34.65■■■■□ 3.14
LSM4-204ENST00000594828 IFT172Q9UG01 1749 aa34.64■■■■□ 3.14
LSM4-204ENST00000594828 ASXL1Q8IXJ9 1541 aa34.62■■■■□ 3.13
LSM4-204ENST00000594828 HRCP23327 699 aa34.61■■■■□ 3.13
LSM4-204ENST00000594828 SPATA31A6Q5VVP1 1343 aa34.58■■■■□ 3.13
LSM4-204ENST00000594828 PIK3C2GO75747 1445 aa34.58■■■■□ 3.13
LSM4-204ENST00000594828 STK26Q9P289 416 aa34.58■■■■□ 3.13
LSM4-204ENST00000594828 TMEM132EQ6IEE7 984 aa34.57■■■■□ 3.12
LSM4-204ENST00000594828 C1orf167Q5SNV9 1468 aa34.55■■■■□ 3.12
LSM4-204ENST00000594828 LRPPRCP42704 1394 aaKnown RBP34.54■■■■□ 3.12
LSM4-204ENST00000594828 ABCC11Q96J66 1382 aa34.51■■■■□ 3.12
LSM4-204ENST00000594828 DDX17Q92841 729 aaKnown RBP34.51■■■■□ 3.12
LSM4-204ENST00000594828 LRRC59Q96AG4 307 aaKnown RBP34.51■■■■□ 3.12
LSM4-204ENST00000594828 C14orf93Q9H972 538 aaKnown RBP34.51■■■■□ 3.12
LSM4-204ENST00000594828 TECPR2O15040 1411 aa34.5■■■■□ 3.11
LSM4-204ENST00000594828 POTEAQ6S8J7 498 aa34.5■■■■□ 3.11
LSM4-204ENST00000594828 WAPLQ7Z5K2 1190 aa34.5■■■■□ 3.11
LSM4-204ENST00000594828 NHSL1Q5SYE7 1610 aa34.5■■■■□ 3.11
LSM4-204ENST00000594828 SHPRHQ149N8 1683 aa34.5■■■■□ 3.11
LSM4-204ENST00000594828 ORAI2Q96SN7 254 aa34.49■■■■□ 3.11
LSM4-204ENST00000594828 MEX3CQ5U5Q3 659 aaKnown RBP34.48■■■■□ 3.11
LSM4-204ENST00000594828 MYOM2P54296 1465 aa34.47■■■■□ 3.11
LSM4-204ENST00000594828 NRXN1Q9ULB1 1477 aa34.46■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms