RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.93■■□□□ 1.26
TRIM28-203ENST00000593582 LRRC7Q96NW7 1537 aa22.92■■□□□ 1.26
TRIM28-203ENST00000593582 STRCP1A6NGW2 1772 aa22.91■■□□□ 1.26
TRIM28-203ENST00000593582 PLEKHG1Q9ULL1 1385 aa22.9■■□□□ 1.26
TRIM28-203ENST00000593582 MYO5BQ9ULV0 1848 aa22.89■■□□□ 1.26
TRIM28-203ENST00000593582 SPHKAPQ2M3C7 1700 aa22.88■■□□□ 1.25
TRIM28-203ENST00000593582 SCAF1Q9H7N4 1312 aaKnown RBP22.88■■□□□ 1.25
TRIM28-203ENST00000593582 PIP4K2BP78356 416 aa22.88■■□□□ 1.25
TRIM28-203ENST00000593582 SLC4A1APQ9BWU0 796 aaKnown RBP22.88■■□□□ 1.25
TRIM28-203ENST00000593582 SENP3Q9H4L4 574 aaPredicted RBP22.88■■□□□ 1.25
TRIM28-203ENST00000593582 KCNA6P17658 529 aa22.87■■□□□ 1.25
TRIM28-203ENST00000593582 NUTM2DQ5VT03 806 aaPredicted RBP22.85■■□□□ 1.25
TRIM28-203ENST00000593582 TRPM2O94759 1503 aa22.83■■□□□ 1.25
TRIM28-203ENST00000593582 ZNF326Q5BKZ1 582 aaKnown RBP22.83■■□□□ 1.25
TRIM28-203ENST00000593582 TBX22Q9Y458 520 aa22.82■■□□□ 1.24
TRIM28-203ENST00000593582 PROSER2Q86WR7 435 aaPredicted RBP22.8■■□□□ 1.24
TRIM28-203ENST00000593582 TMEM94Q12767 1356 aa22.79■■□□□ 1.24
TRIM28-203ENST00000593582 NKTRP30414 1462 aaKnown RBP22.79■■□□□ 1.24
TRIM28-203ENST00000593582 CLTCL1P53675 1640 aa22.79■■□□□ 1.24
TRIM28-203ENST00000593582 ACIN1Q9UKV3 1341 aaKnown RBP22.78■■□□□ 1.24
TRIM28-203ENST00000593582 NWD1Q149M9 1564 aa22.77■■□□□ 1.24
TRIM28-203ENST00000593582 ADAMTS13Q76LX8 1427 aa22.76■■□□□ 1.23
TRIM28-203ENST00000593582 ALKQ9UM73 1620 aa22.75■■□□□ 1.23
TRIM28-203ENST00000593582 DIP2AQ14689 1571 aa22.75■■□□□ 1.23
TRIM28-203ENST00000593582 SETD5Q9C0A6 1442 aa22.74■■□□□ 1.23
TRIM28-203ENST00000593582 HSPA1LP34931 641 aa22.74■■□□□ 1.23
TRIM28-203ENST00000593582 RBM33Q96EV2 1170 aaKnown RBP22.74■■□□□ 1.23
TRIM28-203ENST00000593582 FOXD1Q16676 465 aa22.73■■□□□ 1.23
TRIM28-203ENST00000593582 MPHOSPH9Q99550 1183 aa22.73■■□□□ 1.23
TRIM28-203ENST00000593582 PIK3R4Q99570 1358 aa22.73■■□□□ 1.23
TRIM28-203ENST00000593582 XIRP1Q702N8 1843 aaKnown RBP22.72■■□□□ 1.23
TRIM28-203ENST00000593582 CHD2O14647 1828 aaKnown RBP22.71■■□□□ 1.23
TRIM28-203ENST00000593582 KIF1BO60333 1816 aa22.71■■□□□ 1.23
TRIM28-203ENST00000593582 SETBP1Q9Y6X0 1596 aa22.68■■□□□ 1.22
TRIM28-203ENST00000593582 NEXMIFQ5QGS0 1516 aa22.68■■□□□ 1.22
TRIM28-203ENST00000593582 MSH6P52701 1360 aa22.68■■□□□ 1.22
TRIM28-203ENST00000593582 DISP3Q9P2K9 1392 aa22.67■■□□□ 1.22
TRIM28-203ENST00000593582 RPGRIP1LQ68CZ1 1315 aa22.67■■□□□ 1.22
TRIM28-203ENST00000593582 VGFO15240 615 aaPredicted RBP22.67■■□□□ 1.22
TRIM28-203ENST00000593582 CCDC144AA2RUR9 1427 aa22.66■■□□□ 1.22
TRIM28-203ENST00000593582 AMOTL2Q9Y2J4 779 aa22.66■■□□□ 1.22
TRIM28-203ENST00000593582 RAB3GAP2Q9H2M9 1393 aa22.65■■□□□ 1.22
TRIM28-203ENST00000593582 C14orf37Q86TY3 774 aa22.65■■□□□ 1.22
TRIM28-203ENST00000593582 NCOA3Q9Y6Q9 1424 aa22.65■■□□□ 1.22
TRIM28-203ENST00000593582 NRXN3Q9Y4C0 1643 aa22.64■■□□□ 1.22
TRIM28-203ENST00000593582 FAM135BQ49AJ0 1406 aa22.62■■□□□ 1.21
TRIM28-203ENST00000593582 PTPRUQ92729 1446 aa22.62■■□□□ 1.21
TRIM28-203ENST00000593582 METP08581 1390 aa22.61■■□□□ 1.21
TRIM28-203ENST00000593582 SLAIN2Q9P270 581 aa22.59■■□□□ 1.21
TRIM28-203ENST00000593582 RGL3Q3MIN7 710 aa22.58■■□□□ 1.21
TRIM28-203ENST00000593582 C19orf44Q9H6X5 657 aa22.58■■□□□ 1.21
TRIM28-203ENST00000593582 ATF3P18847 181 aa22.56■■□□□ 1.2
TRIM28-203ENST00000593582 CADPS2Q86UW7 1296 aa22.56■■□□□ 1.2
TRIM28-203ENST00000593582 SPATA31E1Q6ZUB1 1445 aa22.56■■□□□ 1.2
TRIM28-203ENST00000593582 XRN1Q8IZH2 1706 aaKnown RBP22.54■■□□□ 1.2
TRIM28-203ENST00000593582 HRCP23327 699 aa22.54■■□□□ 1.2
TRIM28-203ENST00000593582 PPLO60437 1756 aa22.53■■□□□ 1.2
TRIM28-203ENST00000593582 ROBO1Q9Y6N7 1651 aa22.52■■□□□ 1.2
TRIM28-203ENST00000593582 ANKRD30BQ9BXX2 1392 aa22.52■■□□□ 1.2
TRIM28-203ENST00000593582 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.49■■□□□ 1.19
TRIM28-203ENST00000593582 ADGRF5Q8IZF2 1346 aa22.49■■□□□ 1.19
TRIM28-203ENST00000593582 DCCP43146 1447 aa22.48■■□□□ 1.19
TRIM28-203ENST00000593582 MED1Q15648 1581 aaPredicted RBP22.47■■□□□ 1.19
TRIM28-203ENST00000593582 PTCH1Q13635 1447 aa22.46■■□□□ 1.19
TRIM28-203ENST00000593582 SETD1AO15047 1707 aaKnown RBP22.45■■□□□ 1.19
TRIM28-203ENST00000593582 ILDR2Q71H61 639 aa22.44■■□□□ 1.18
TRIM28-203ENST00000593582 ADGRL3Q9HAR2 1447 aa22.44■■□□□ 1.18
TRIM28-203ENST00000593582 ROBO2Q9HCK4 1378 aa22.43■■□□□ 1.18
TRIM28-203ENST00000593582 PRAG1Q86YV5 1406 aa22.42■■□□□ 1.18
TRIM28-203ENST00000593582 IFT172Q9UG01 1749 aa22.42■■□□□ 1.18
TRIM28-203ENST00000593582 PIK3C2GO75747 1445 aa22.41■■□□□ 1.18
TRIM28-203ENST00000593582 PHF23Q9BUL5 403 aaPredicted RBP22.41■■□□□ 1.18
TRIM28-203ENST00000593582 BRINP3Q76B58 766 aa22.39■■□□□ 1.17
TRIM28-203ENST00000593582 PHLPP1O60346 1717 aa22.38■■□□□ 1.17
TRIM28-203ENST00000593582 MST1RQ04912 1400 aa22.38■■□□□ 1.17
TRIM28-203ENST00000593582 STK26Q9P289 416 aa22.37■■□□□ 1.17
TRIM28-203ENST00000593582 MYOM2P54296 1465 aa22.36■■□□□ 1.17
TRIM28-203ENST00000593582 TMEM132EQ6IEE7 984 aa22.36■■□□□ 1.17
TRIM28-203ENST00000593582 NALCNQ8IZF0 1738 aa22.36■■□□□ 1.17
TRIM28-203ENST00000593582 JCADQ9P266 1359 aa22.36■■□□□ 1.17
TRIM28-203ENST00000593582 LRPPRCP42704 1394 aaKnown RBP22.35■■□□□ 1.17
TRIM28-203ENST00000593582 NRXN1Q9ULB1 1477 aa22.34■■□□□ 1.17
TRIM28-203ENST00000593582 C14orf93Q9H972 538 aaKnown RBP22.34■■□□□ 1.17
TRIM28-203ENST00000593582 TECPR2O15040 1411 aa22.33■■□□□ 1.17
TRIM28-203ENST00000593582 AHDC1Q5TGY3 1603 aaPredicted RBP22.33■■□□□ 1.17
TRIM28-203ENST00000593582 ABCC11Q96J66 1382 aa22.33■■□□□ 1.17
TRIM28-203ENST00000593582 ASXL1Q8IXJ9 1541 aa22.32■■□□□ 1.16
TRIM28-203ENST00000593582 COL16A1Q07092 1604 aaPredicted RBP22.32■■□□□ 1.16
TRIM28-203ENST00000593582 CFAP70Q5T0N1 1121 aa22.31■■□□□ 1.16
TRIM28-203ENST00000593582 YTHDC2Q9H6S0 1430 aaKnown RBP22.31■■□□□ 1.16
TRIM28-203ENST00000593582 C1orf167Q5SNV9 1468 aa22.29■■□□□ 1.16
TRIM28-203ENST00000593582 WAPLQ7Z5K2 1190 aa22.29■■□□□ 1.16
TRIM28-203ENST00000593582 DCAF11Q8TEB1 546 aa22.29■■□□□ 1.16
TRIM28-203ENST00000593582 STAC3Q96MF2 364 aa22.29■■□□□ 1.16
TRIM28-203ENST00000593582 DHX57Q6P158 1386 aaKnown RBP22.28■■□□□ 1.16
TRIM28-203ENST00000593582 KDM2AQ9Y2K7 1162 aa22.28■■□□□ 1.16
TRIM28-203ENST00000593582 SOCS7O14512 581 aa22.27■■□□□ 1.16
TRIM28-203ENST00000593582 LAMC1P11047 1609 aa22.27■■□□□ 1.16
TRIM28-203ENST00000593582 SPATA31A6Q5VVP1 1343 aa22.26■■□□□ 1.15
TRIM28-203ENST00000593582 SIRT1Q96EB6 747 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms