RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 ABTB2Q8N961 1025 aa8.04□□□□□ -1.12
SMAD4-212ENST00000591126 PNISRQ8TF01 805 aaKnown RBP8.04□□□□□ -1.12
SMAD4-212ENST00000591126 CDCA7Q9BWT1 371 aaPredicted RBP8.04□□□□□ -1.12
SMAD4-212ENST00000591126 PPP1R1BQ9UD71 204 aaPredicted RBP8.04□□□□□ -1.12
SMAD4-212ENST00000591126 NLRP2Q9NX02 1062 aa8.04□□□□□ -1.12
SMAD4-212ENST00000591126 KIAA0556O60303 1618 aa8.04□□□□□ -1.12
SMAD4-212ENST00000591126 WDHD1O75717 1129 aaPredicted RBP8.04□□□□□ -1.12
SMAD4-212ENST00000591126 NEXNQ0ZGT2 675 aa8.04□□□□□ -1.12
SMAD4-212ENST00000591126 DDX10Q13206 875 aaKnown RBP8.04□□□□□ -1.12
SMAD4-212ENST00000591126 NUTM2DQ5VT03 806 aaPredicted RBP8.04□□□□□ -1.12
SMAD4-212ENST00000591126 LAS1LQ9Y4W2 734 aaKnown RBP8.04□□□□□ -1.12
SMAD4-212ENST00000591126 NOL10Q9BSC4 688 aaKnown RBP8.03□□□□□ -1.12
SMAD4-212ENST00000591126 ATP10BO94823 1461 aa8.03□□□□□ -1.12
SMAD4-212ENST00000591126 ITSN2Q9NZM3 1697 aa8.03□□□□□ -1.12
SMAD4-212ENST00000591126 U2AF1L5P0DN76 240 aaPredicted RBP8.03□□□□□ -1.12
SMAD4-212ENST00000591126 U2AF1Q01081 240 aaKnown RBP eCLIP8.03□□□□□ -1.12
SMAD4-212ENST00000591126 FAM9BQ8IZU0 186 aa8.03□□□□□ -1.12
SMAD4-212ENST00000591126 DUOX2Q9NRD8 1548 aa8.03□□□□□ -1.12
SMAD4-212ENST00000591126 GPATCH3Q96I76 525 aa8.02□□□□□ -1.12
SMAD4-212ENST00000591126 PBRM1Q86U86 1689 aa8.02□□□□□ -1.13
SMAD4-212ENST00000591126 GAS2L2Q8NHY3 880 aa8.02□□□□□ -1.13
SMAD4-212ENST00000591126 C19orf44Q9H6X5 657 aa8.02□□□□□ -1.13
SMAD4-212ENST00000591126 CDK11BP21127 795 aaKnown RBP8.01□□□□□ -1.13
SMAD4-212ENST00000591126 TOM1L2Q6ZVM7 507 aa8.01□□□□□ -1.13
SMAD4-212ENST00000591126 AMOTL1Q8IY63 956 aa8.01□□□□□ -1.13
SMAD4-212ENST00000591126 CHMP4CQ96CF2 233 aa8.01□□□□□ -1.13
SMAD4-212ENST00000591126 DDRGK1Q96HY6 314 aa8.01□□□□□ -1.13
SMAD4-212ENST00000591126 ZFYVE16Q7Z3T8 1539 aa8.01□□□□□ -1.13
SMAD4-212ENST00000591126 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.01□□□□□ -1.13
SMAD4-212ENST00000591126 NINLQ9Y2I6 1382 aa8.01□□□□□ -1.13
SMAD4-212ENST00000591126 CAMSAP2Q08AD1 1489 aa8□□□□□ -1.13
SMAD4-212ENST00000591126 HMMRO75330 724 aa8□□□□□ -1.13
SMAD4-212ENST00000591126 TNNT2P45379 298 aaPredicted RBP8□□□□□ -1.13
SMAD4-212ENST00000591126 ZNF330Q9Y3S2 320 aaPredicted RBP8□□□□□ -1.13
SMAD4-212ENST00000591126 HNRNPUQ00839 825 aaKnown RBP eCLIP8□□□□□ -1.13
SMAD4-212ENST00000591126 ZNF772Q68DY9 489 aaPredicted RBP8□□□□□ -1.13
SMAD4-212ENST00000591126 SYTL4Q96C24 671 aaPredicted RBP8□□□□□ -1.13
SMAD4-212ENST00000591126 LTV1Q96GA3 475 aaPredicted RBP8□□□□□ -1.13
SMAD4-212ENST00000591126 TIAM1Q13009 1591 aa8□□□□□ -1.13
SMAD4-212ENST00000591126 KDM5BQ9UGL1 1544 aa7.99□□□□□ -1.13
SMAD4-212ENST00000591126 NUTM2FA1L443 756 aa7.99□□□□□ -1.13
SMAD4-212ENST00000591126 TBX22Q9Y458 520 aa7.99□□□□□ -1.13
SMAD4-212ENST00000591126 ABCA5Q8WWZ7 1642 aa7.99□□□□□ -1.13
SMAD4-212ENST00000591126 GORABQ5T7V8 394 aa7.99□□□□□ -1.13
SMAD4-212ENST00000591126 PHF8Q9UPP1 1060 aa7.99□□□□□ -1.13
SMAD4-212ENST00000591126 AMOTL2Q9Y2J4 779 aa7.99□□□□□ -1.13
SMAD4-212ENST00000591126 CCDC61Q9Y6R9 512 aa7.99□□□□□ -1.13
SMAD4-212ENST00000591126 HSP90AA1P07900 732 aaKnown RBP7.99□□□□□ -1.13
SMAD4-212ENST00000591126 ARAP1Q96P48 1450 aa7.98□□□□□ -1.13
SMAD4-212ENST00000591126 CC2D1BQ5T0F9 858 aaKnown RBP7.98□□□□□ -1.13
SMAD4-212ENST00000591126 L3MBTL2Q969R5 705 aa7.98□□□□□ -1.13
SMAD4-212ENST00000591126 SLC26A8Q96RN1 970 aa7.98□□□□□ -1.13
SMAD4-212ENST00000591126 ZNF644Q9H582 1327 aaPredicted RBP7.98□□□□□ -1.13
SMAD4-212ENST00000591126 ZMYM3Q14202 1370 aa7.98□□□□□ -1.13
SMAD4-212ENST00000591126 DIAPH1O60610 1272 aaKnown RBP7.98□□□□□ -1.13
SMAD4-212ENST00000591126 KCNA6P17658 529 aa7.98□□□□□ -1.13
SMAD4-212ENST00000591126 RBM33Q96EV2 1170 aaKnown RBP7.98□□□□□ -1.13
SMAD4-212ENST00000591126 CTTNBP2Q8WZ74 1663 aa7.97□□□□□ -1.13
SMAD4-212ENST00000591126 TRIM34Q9BYJ4 488 aa7.97□□□□□ -1.13
SMAD4-212ENST00000591126 TRAPPC8Q9Y2L5 1435 aa7.97□□□□□ -1.13
SMAD4-212ENST00000591126 MAPKBP1O60336 1514 aa7.97□□□□□ -1.13
SMAD4-212ENST00000591126 ZNF652Q9Y2D9 606 aa7.97□□□□□ -1.13
SMAD4-212ENST00000591126 A0A087WZG4 1122 aa7.97□□□□□ -1.13
SMAD4-212ENST00000591126 POLD1P28340 1107 aa7.97□□□□□ -1.13
SMAD4-212ENST00000591126 SMARCC1Q92922 1105 aaPredicted RBP7.97□□□□□ -1.13
SMAD4-212ENST00000591126 CDK13Q14004 1512 aaKnown RBP7.97□□□□□ -1.13
SMAD4-212ENST00000591126 FRAT2O75474 233 aaPredicted RBP7.97□□□□□ -1.13
SMAD4-212ENST00000591126 KLHL34Q8N239 644 aa7.97□□□□□ -1.13
SMAD4-212ENST00000591126 KIF6Q6ZMV9 814 aa7.96□□□□□ -1.13
SMAD4-212ENST00000591126 PRAM1Q96QH2 718 aa7.96□□□□□ -1.13
SMAD4-212ENST00000591126 TEX13AQ9BXU3 409 aaPredicted RBP7.96□□□□□ -1.13
SMAD4-212ENST00000591126 STRN4Q9NRL3 753 aa7.96□□□□□ -1.13
SMAD4-212ENST00000591126 SIN3AQ96ST3 1273 aa7.95□□□□□ -1.14
SMAD4-212ENST00000591126 EXOC5O00471 708 aa7.95□□□□□ -1.14
SMAD4-212ENST00000591126 AMOTQ4VCS5 1084 aa7.95□□□□□ -1.14
SMAD4-212ENST00000591126 BCL11AQ9H165 835 aa7.95□□□□□ -1.14
SMAD4-212ENST00000591126 MAGI3Q5TCQ9 1506 aa7.95□□□□□ -1.14
SMAD4-212ENST00000591126 TARBP1Q13395 1621 aaKnown RBP7.95□□□□□ -1.14
SMAD4-212ENST00000591126 PTPRKQ15262 1439 aa7.95□□□□□ -1.14
SMAD4-212ENST00000591126 NCOA1Q15788 1441 aa7.95□□□□□ -1.14
SMAD4-212ENST00000591126 HSPA5P11021 654 aaKnown RBP7.95□□□□□ -1.14
SMAD4-212ENST00000591126 KCNJ4P48050 445 aa7.95□□□□□ -1.14
SMAD4-212ENST00000591126 KDM6BO15054 1643 aa7.95□□□□□ -1.14
SMAD4-212ENST00000591126 SHANK2Q9UPX8 1470 aa7.95□□□□□ -1.14
SMAD4-212ENST00000591126 TTC21AQ8NDW8 1320 aa7.94□□□□□ -1.14
SMAD4-212ENST00000591126 KRT28Q7Z3Y7 464 aa7.94□□□□□ -1.14
SMAD4-212ENST00000591126 CDK19Q9BWU1 502 aa7.94□□□□□ -1.14
SMAD4-212ENST00000591126 CTDP1Q9Y5B0 961 aaPredicted RBP7.94□□□□□ -1.14
SMAD4-212ENST00000591126 MCCP23508 829 aa7.94□□□□□ -1.14
SMAD4-212ENST00000591126 BAG6P46379 1132 aa7.93□□□□□ -1.14
SMAD4-212ENST00000591126 AMER1Q5JTC6 1135 aaPredicted RBP7.93□□□□□ -1.14
SMAD4-212ENST00000591126 CEBPAP49715 358 aaPredicted RBP7.93□□□□□ -1.14
SMAD4-212ENST00000591126 NEUROD2Q15784 382 aa7.93□□□□□ -1.14
SMAD4-212ENST00000591126 CWC22Q9HCG8 908 aaKnown RBP7.93□□□□□ -1.14
SMAD4-212ENST00000591126 RIMS2Q9UQ26 1411 aa7.93□□□□□ -1.14
SMAD4-212ENST00000591126 GPATCH8Q9UKJ3 1502 aaKnown RBP7.93□□□□□ -1.14
SMAD4-212ENST00000591126 ARHGEF10O15013 1369 aa7.93□□□□□ -1.14
SMAD4-212ENST00000591126 STARD3NLO95772 234 aa7.92□□□□□ -1.14
SMAD4-212ENST00000591126 NCBP3Q53F19 620 aaKnown RBP7.92□□□□□ -1.14
SMAD4-212ENST00000591126 PUS7Q96PZ0 661 aaKnown RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms