RNA–Protein interactions for RNA: ENST00000590830.5

MBD3-208, Transcript of methyl-CpG binding domain protein 3, human

TSL 1 (best)

Gene MBD3, Length 1,035 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD3-208	ENST00000590830	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.39	■■■□□ 2.94
MBD3-208	ENST00000590830	SENP3	Q9H4L4	574 aa	Predicted RBP	33.39	■■■□□ 2.94
MBD3-208	ENST00000590830	MPHOSPH9	Q99550	1183 aa		33.38	■■■□□ 2.93
MBD3-208	ENST00000590830	HDGF	P51858	240 aa	Known RBP	33.37	■■■□□ 2.93
MBD3-208	ENST00000590830	TRPM2	O94759	1503 aa		33.36	■■■□□ 2.93
MBD3-208	ENST00000590830	STRCP1	A6NGW2	1772 aa		33.36	■■■□□ 2.93
MBD3-208	ENST00000590830	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.35	■■■□□ 2.93
MBD3-208	ENST00000590830	PLEKHG1	Q9ULL1	1385 aa		33.34	■■■□□ 2.93
MBD3-208	ENST00000590830	PPP1R15A	O75807	674 aa	Predicted RBP	33.34	■■■□□ 2.93
MBD3-208	ENST00000590830	CLTCL1	P53675	1640 aa		33.34	■■■□□ 2.93
MBD3-208	ENST00000590830	BCAN	Q96GW7	911 aa		33.33	■■■□□ 2.93
MBD3-208	ENST00000590830	RAB3GAP2	Q9H2M9	1393 aa		33.33	■■■□□ 2.93
MBD3-208	ENST00000590830	LRRC7	Q96NW7	1537 aa		33.28	■■■□□ 2.92
MBD3-208	ENST00000590830	UBAP1L	F5GYI3	381 aa		33.28	■■■□□ 2.92
MBD3-208	ENST00000590830	ZNF326	Q5BKZ1	582 aa	Known RBP	33.27	■■■□□ 2.92
MBD3-208	ENST00000590830	KCNA6	P17658	529 aa		33.26	■■■□□ 2.91
MBD3-208	ENST00000590830	ACIN1	Q9UKV3	1341 aa	Known RBP	33.25	■■■□□ 2.91
MBD3-208	ENST00000590830	TBX22	Q9Y458	520 aa		33.24	■■■□□ 2.91
MBD3-208	ENST00000590830	ADAMTS13	Q76LX8	1427 aa		33.22	■■■□□ 2.91
MBD3-208	ENST00000590830	HRC	P23327	699 aa		33.16	■■■□□ 2.9
MBD3-208	ENST00000590830	NEXMIF	Q5QGS0	1516 aa		33.15	■■■□□ 2.9
MBD3-208	ENST00000590830	RBM33	Q96EV2	1170 aa	Known RBP	33.14	■■■□□ 2.9
MBD3-208	ENST00000590830	KIF1B	O60333	1816 aa		33.14	■■■□□ 2.9
MBD3-208	ENST00000590830	TOM1	O60784	492 aa		33.13	■■■□□ 2.89
MBD3-208	ENST00000590830	PROSER2	Q86WR7	435 aa	Predicted RBP	33.12	■■■□□ 2.89
MBD3-208	ENST00000590830	ALK	Q9UM73	1620 aa		33.11	■■■□□ 2.89
MBD3-208	ENST00000590830	CCDC144A	A2RUR9	1427 aa		33.11	■■■□□ 2.89
MBD3-208	ENST00000590830	TMEM94	Q12767	1356 aa		33.1	■■■□□ 2.89
MBD3-208	ENST00000590830	NWD1	Q149M9	1564 aa		33.1	■■■□□ 2.89
MBD3-208	ENST00000590830	RPGRIP1L	Q68CZ1	1315 aa		33.08	■■■□□ 2.89
MBD3-208	ENST00000590830	PIP4K2B	P78356	416 aa		33.08	■■■□□ 2.89
MBD3-208	ENST00000590830	NRXN3	Q9Y4C0	1643 aa		33.07	■■■□□ 2.88
MBD3-208	ENST00000590830	XIRP1	Q702N8	1843 aa	Known RBP	33.07	■■■□□ 2.88
MBD3-208	ENST00000590830	DIP2A	Q14689	1571 aa		33.06	■■■□□ 2.88
MBD3-208	ENST00000590830	SETBP1	Q9Y6X0	1596 aa		33.06	■■■□□ 2.88
MBD3-208	ENST00000590830	SPATA31E1	Q6ZUB1	1445 aa		33.06	■■■□□ 2.88
MBD3-208	ENST00000590830	CHD2	O14647	1828 aa	Known RBP	33.06	■■■□□ 2.88
MBD3-208	ENST00000590830	PTPRU	Q92729	1446 aa		33.05	■■■□□ 2.88
MBD3-208	ENST00000590830	PIK3R4	Q99570	1358 aa		33.05	■■■□□ 2.88
MBD3-208	ENST00000590830	NKTR	P30414	1462 aa	Known RBP	33.05	■■■□□ 2.88
MBD3-208	ENST00000590830	VGF	O15240	615 aa	Predicted RBP	33.04	■■■□□ 2.88
MBD3-208	ENST00000590830	RGL3	Q3MIN7	710 aa		33.04	■■■□□ 2.88
MBD3-208	ENST00000590830	MET	P08581	1390 aa		33.02	■■■□□ 2.88
MBD3-208	ENST00000590830	AMOTL2	Q9Y2J4	779 aa		33.02	■■■□□ 2.88
MBD3-208	ENST00000590830	SCAF1	Q9H7N4	1312 aa	Known RBP	33.02	■■■□□ 2.88
MBD3-208	ENST00000590830	ANKRD30B	Q9BXX2	1392 aa		32.98	■■■□□ 2.87
MBD3-208	ENST00000590830	ADGRF5	Q8IZF2	1346 aa		32.95	■■■□□ 2.86
MBD3-208	ENST00000590830	PPL	O60437	1756 aa		32.93	■■■□□ 2.86
MBD3-208	ENST00000590830	HSPA1L	P34931	641 aa		32.92	■■■□□ 2.86
MBD3-208	ENST00000590830	NCOA3	Q9Y6Q9	1424 aa		32.87	■■■□□ 2.85
MBD3-208	ENST00000590830	MSH6	P52701	1360 aa		32.86	■■■□□ 2.85
MBD3-208	ENST00000590830	XRN1	Q8IZH2	1706 aa	Known RBP	32.85	■■■□□ 2.85
MBD3-208	ENST00000590830	SETD1A	O15047	1707 aa	Known RBP	32.82	■■■□□ 2.85
MBD3-208	ENST00000590830	C14orf37	Q86TY3	774 aa		32.81	■■■□□ 2.84
MBD3-208	ENST00000590830	C19orf44	Q9H6X5	657 aa		32.81	■■■□□ 2.84
MBD3-208	ENST00000590830	IFT172	Q9UG01	1749 aa		32.81	■■■□□ 2.84
MBD3-208	ENST00000590830	FAM135B	Q49AJ0	1406 aa		32.79	■■■□□ 2.84
MBD3-208	ENST00000590830	SLAIN2	Q9P270	581 aa		32.79	■■■□□ 2.84
MBD3-208	ENST00000590830	PIK3C2G	O75747	1445 aa		32.76	■■■□□ 2.83
MBD3-208	ENST00000590830	ROBO2	Q9HCK4	1378 aa		32.74	■■■□□ 2.83
MBD3-208	ENST00000590830	TMEM132E	Q6IEE7	984 aa		32.72	■■■□□ 2.83
MBD3-208	ENST00000590830	NRXN1	Q9ULB1	1477 aa		32.72	■■■□□ 2.83
MBD3-208	ENST00000590830	ATF3	P18847	181 aa		32.71	■■■□□ 2.83
MBD3-208	ENST00000590830	CADPS2	Q86UW7	1296 aa		32.71	■■■□□ 2.83
MBD3-208	ENST00000590830	C14orf93	Q9H972	538 aa	Known RBP	32.71	■■■□□ 2.83
MBD3-208	ENST00000590830	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.71	■■■□□ 2.83
MBD3-208	ENST00000590830	PRAG1	Q86YV5	1406 aa		32.69	■■■□□ 2.82
MBD3-208	ENST00000590830	MYOM2	P54296	1465 aa		32.69	■■■□□ 2.82
MBD3-208	ENST00000590830	PTCH1	Q13635	1447 aa		32.68	■■■□□ 2.82
MBD3-208	ENST00000590830	TRIM26	Q12899	539 aa	Predicted RBP	32.68	■■■□□ 2.82
MBD3-208	ENST00000590830	CFAP70	Q5T0N1	1121 aa		32.68	■■■□□ 2.82
MBD3-208	ENST00000590830	DHX57	Q6P158	1386 aa	Known RBP	32.67	■■■□□ 2.82
MBD3-208	ENST00000590830	ASXL1	Q8IXJ9	1541 aa		32.67	■■■□□ 2.82
MBD3-208	ENST00000590830	DCAF11	Q8TEB1	546 aa		32.66	■■■□□ 2.82
MBD3-208	ENST00000590830	STK26	Q9P289	416 aa		32.66	■■■□□ 2.82
MBD3-208	ENST00000590830	ROBO1	Q9Y6N7	1651 aa		32.66	■■■□□ 2.82
MBD3-208	ENST00000590830	KDM2A	Q9Y2K7	1162 aa		32.65	■■■□□ 2.82
MBD3-208	ENST00000590830	LRPPRC	P42704	1394 aa	Known RBP	32.64	■■■□□ 2.82
MBD3-208	ENST00000590830	ADGRL3	Q9HAR2	1447 aa		32.64	■■■□□ 2.82
MBD3-208	ENST00000590830	DCC	P43146	1447 aa		32.62	■■■□□ 2.81
MBD3-208	ENST00000590830	ABCC11	Q96J66	1382 aa		32.61	■■■□□ 2.81
MBD3-208	ENST00000590830	WAPL	Q7Z5K2	1190 aa		32.59	■■■□□ 2.81
MBD3-208	ENST00000590830	TECPR2	O15040	1411 aa		32.59	■■■□□ 2.81
MBD3-208	ENST00000590830	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.58	■■■□□ 2.81
MBD3-208	ENST00000590830	MST1R	Q04912	1400 aa		32.57	■■■□□ 2.8
MBD3-208	ENST00000590830	STAC3	Q96MF2	364 aa		32.56	■■■□□ 2.8
MBD3-208	ENST00000590830	NALCN	Q8IZF0	1738 aa		32.56	■■■□□ 2.8
MBD3-208	ENST00000590830	BRINP3	Q76B58	766 aa		32.55	■■■□□ 2.8
MBD3-208	ENST00000590830	DISP3	Q9P2K9	1392 aa		32.55	■■■□□ 2.8
MBD3-208	ENST00000590830	PLEKHH1	Q9ULM0	1364 aa		32.54	■■■□□ 2.8
MBD3-208	ENST00000590830	SIN3A	Q96ST3	1273 aa		32.52	■■■□□ 2.8
MBD3-208	ENST00000590830	SIRT1	Q96EB6	747 aa		32.51	■■■□□ 2.79
MBD3-208	ENST00000590830	LAMC1	P11047	1609 aa		32.48	■■■□□ 2.79
MBD3-208	ENST00000590830	ADGRB1	O14514	1584 aa		32.46	■■■□□ 2.79
MBD3-208	ENST00000590830	KNDC1	Q76NI1	1749 aa		32.46	■■■□□ 2.79
MBD3-208	ENST00000590830	C1orf167	Q5SNV9	1468 aa		32.45	■■■□□ 2.79
MBD3-208	ENST00000590830	PHLPP1	O60346	1717 aa		32.43	■■■□□ 2.78
MBD3-208	ENST00000590830	MED1	Q15648	1581 aa	Predicted RBP	32.42	■■■□□ 2.78
MBD3-208	ENST00000590830	PRAM1	Q96QH2	718 aa		32.41	■■■□□ 2.78
MBD3-208	ENST00000590830	ORAI2	Q96SN7	254 aa		32.41	■■■□□ 2.78

Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms