RNA–Protein interactions for RNA: ENST00000589116.1

CCBE1-203, Transcript of collagen and calcium binding EGF domains 1, humanhuman

TSL 1 (best)

Gene CCBE1, Length 1,691 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCBE1-203ENST00000589116 LTBP4Q8N2S1 1624 aa17■□□□□ 0.31
CCBE1-203ENST00000589116 MYOM2P54296 1465 aa17■□□□□ 0.31
CCBE1-203ENST00000589116 POLR1AO95602 1720 aaPredicted RBP16.99■□□□□ 0.31
CCBE1-203ENST00000589116 GPRASP1Q5JY77 1395 aa16.98■□□□□ 0.31
CCBE1-203ENST00000589116 USP47Q96K76 1375 aa16.98■□□□□ 0.31
CCBE1-203ENST00000589116 ERVK-7P63135 1459 aa16.97■□□□□ 0.31
CCBE1-203ENST00000589116 KIAA1210Q9ULL0 1709 aa16.97■□□□□ 0.31
CCBE1-203ENST00000589116 ROCK2O75116 1388 aaKnown RBP16.97■□□□□ 0.31
CCBE1-203ENST00000589116 HIRIP3Q9BW71 556 aaPredicted RBP16.96■□□□□ 0.31
CCBE1-203ENST00000589116 UBAP1LF5GYI3 381 aa16.95■□□□□ 0.3
CCBE1-203ENST00000589116 CARD11Q9BXL7 1154 aa16.95■□□□□ 0.3
CCBE1-203ENST00000589116 SLC52A1Q9NWF4 448 aa16.95■□□□□ 0.3
CCBE1-203ENST00000589116 PPLO60437 1756 aa16.95■□□□□ 0.3
CCBE1-203ENST00000589116 NRXN1Q9ULB1 1477 aa16.93■□□□□ 0.3
CCBE1-203ENST00000589116 RPGRIP1LQ68CZ1 1315 aa16.93■□□□□ 0.3
CCBE1-203ENST00000589116 SETD1BQ9UPS6 1966 aaKnown RBP16.92■□□□□ 0.3
CCBE1-203ENST00000589116 ESF1Q9H501 851 aaKnown RBP16.91■□□□□ 0.3
CCBE1-203ENST00000589116 TMEM131LA2VDJ0 1609 aa16.9■□□□□ 0.3
CCBE1-203ENST00000589116 IQGAP1P46940 1657 aa16.88■□□□□ 0.29
CCBE1-203ENST00000589116 MED1Q15648 1581 aaPredicted RBP16.88■□□□□ 0.29
CCBE1-203ENST00000589116 NEXMIFQ5QGS0 1516 aa16.88■□□□□ 0.29
CCBE1-203ENST00000589116 WASHC2AQ641Q2 1341 aa16.88■□□□□ 0.29
CCBE1-203ENST00000589116 CHGAP10645 457 aaKnown RBP16.88■□□□□ 0.29
CCBE1-203ENST00000589116 IDI1Q13907 227 aa16.88■□□□□ 0.29
CCBE1-203ENST00000589116 ZMYM3Q14202 1370 aa16.87■□□□□ 0.29
CCBE1-203ENST00000589116 CCDC7Q96M83 1385 aa16.87■□□□□ 0.29
CCBE1-203ENST00000589116 DDX10Q13206 875 aaKnown RBP16.87■□□□□ 0.29
CCBE1-203ENST00000589116 NBPF1Q3BBV0 1214 aa16.86■□□□□ 0.29
CCBE1-203ENST00000589116 MYO5BQ9ULV0 1848 aa16.86■□□□□ 0.29
CCBE1-203ENST00000589116 FBXO31Q5XUX0 539 aaPredicted RBP16.85■□□□□ 0.29
CCBE1-203ENST00000589116 PIK3C2GO75747 1445 aa16.85■□□□□ 0.29
CCBE1-203ENST00000589116 ZFYVE9O95405 1425 aa16.85■□□□□ 0.29
CCBE1-203ENST00000589116 SETBP1Q9Y6X0 1596 aa16.85■□□□□ 0.29
CCBE1-203ENST00000589116 C3P01024 1663 aa16.84■□□□□ 0.29
CCBE1-203ENST00000589116 MIER1Q8N108 512 aa16.84■□□□□ 0.29
CCBE1-203ENST00000589116 ADGRF5Q8IZF2 1346 aa16.83■□□□□ 0.29
CCBE1-203ENST00000589116 ZNF335Q9H4Z2 1342 aaPredicted RBP16.83■□□□□ 0.29
CCBE1-203ENST00000589116 SCAF1Q9H7N4 1312 aaKnown RBP16.83■□□□□ 0.29
CCBE1-203ENST00000589116 SCAF11Q99590 1463 aaKnown RBP16.83■□□□□ 0.28
CCBE1-203ENST00000589116 PHF23Q9BUL5 403 aaPredicted RBP16.83■□□□□ 0.28
CCBE1-203ENST00000589116 KDM5AP29375 1690 aaKnown RBP16.83■□□□□ 0.28
CCBE1-203ENST00000589116 KIF7Q2M1P5 1343 aa16.82■□□□□ 0.28
CCBE1-203ENST00000589116 ST20-MTHFSA0A0A6YYL1 179 aa16.81■□□□□ 0.28
CCBE1-203ENST00000589116 C11orf95C9JLR9 678 aaPredicted RBP16.81■□□□□ 0.28
CCBE1-203ENST00000589116 VGFO15240 615 aaPredicted RBP16.81■□□□□ 0.28
CCBE1-203ENST00000589116 EIF3AQ14152 1382 aaKnown RBP16.8■□□□□ 0.28
CCBE1-203ENST00000589116 HSPA1LP34931 641 aa16.79■□□□□ 0.28
CCBE1-203ENST00000589116 TNRQ92752 1358 aa16.79■□□□□ 0.28
CCBE1-203ENST00000589116 A2ML1A8K2U0 1454 aa16.79■□□□□ 0.28
CCBE1-203ENST00000589116 CFAP70Q5T0N1 1121 aa16.77■□□□□ 0.28
CCBE1-203ENST00000589116 NCKAP5LQ9HCH0 1330 aa16.77■□□□□ 0.27
CCBE1-203ENST00000589116 PIP4K2BP78356 416 aa16.76■□□□□ 0.27
CCBE1-203ENST00000589116 C14orf93Q9H972 538 aaKnown RBP16.76■□□□□ 0.27
CCBE1-203ENST00000589116 STAG3Q9UJ98 1225 aa16.76■□□□□ 0.27
CCBE1-203ENST00000589116 ADGRB1O14514 1584 aa16.76■□□□□ 0.27
CCBE1-203ENST00000589116 NLRP1Q9C000 1473 aa16.76■□□□□ 0.27
CCBE1-203ENST00000589116 MYO3AQ8NEV4 1616 aa16.76■□□□□ 0.27
CCBE1-203ENST00000589116 TESK2Q96S53 571 aa16.75■□□□□ 0.27
CCBE1-203ENST00000589116 UBR1Q8IWV7 1749 aa16.73■□□□□ 0.27
CCBE1-203ENST00000589116 ANP32CO43423 234 aa16.72■□□□□ 0.27
CCBE1-203ENST00000589116 SLC24A1O60721 1099 aa16.72■□□□□ 0.27
CCBE1-203ENST00000589116 RIMS2Q9UQ26 1411 aa16.71■□□□□ 0.27
CCBE1-203ENST00000589116 TOM1O60784 492 aa16.71■□□□□ 0.27
CCBE1-203ENST00000589116 TMF1P82094 1093 aa16.7■□□□□ 0.26
CCBE1-203ENST00000589116 SBNO2Q9Y2G9 1366 aa16.7■□□□□ 0.26
CCBE1-203ENST00000589116 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.69■□□□□ 0.26
CCBE1-203ENST00000589116 ASXL1Q8IXJ9 1541 aa16.67■□□□□ 0.26
CCBE1-203ENST00000589116 ARHGEF28Q8N1W1 1705 aaKnown RBP16.67■□□□□ 0.26
CCBE1-203ENST00000589116 HDGFP51858 240 aaKnown RBP16.67■□□□□ 0.26
CCBE1-203ENST00000589116 CDCA8Q53HL2 280 aa16.67■□□□□ 0.26
CCBE1-203ENST00000589116 ALKQ9UM73 1620 aa16.67■□□□□ 0.26
CCBE1-203ENST00000589116 NUTM2DQ5VT03 806 aaPredicted RBP16.66■□□□□ 0.26
CCBE1-203ENST00000589116 CCER2I3L3R5 266 aa16.65■□□□□ 0.26
CCBE1-203ENST00000589116 QRICH2Q9H0J4 1663 aa16.65■□□□□ 0.26
CCBE1-203ENST00000589116 TMEM2Q9UHN6 1383 aa16.65■□□□□ 0.26
CCBE1-203ENST00000589116 SETD1AO15047 1707 aaKnown RBP16.65■□□□□ 0.26
CCBE1-203ENST00000589116 POLR3GLQ9BT43 218 aa16.65■□□□□ 0.26
CCBE1-203ENST00000589116 CENPJQ9HC77 1338 aaPredicted RBP16.63■□□□□ 0.25
CCBE1-203ENST00000589116 NRXN3Q9Y4C0 1643 aa16.63■□□□□ 0.25
CCBE1-203ENST00000589116 SLIT1O75093 1534 aa16.62■□□□□ 0.25
CCBE1-203ENST00000589116 ZNF142P52746 1687 aaPredicted RBP16.62■□□□□ 0.25
CCBE1-203ENST00000589116 TMEM132EQ6IEE7 984 aa16.62■□□□□ 0.25
CCBE1-203ENST00000589116 ARHGAP23Q9P227 1491 aa16.61■□□□□ 0.25
CCBE1-203ENST00000589116 YTHDC2Q9H6S0 1430 aaKnown RBP16.6■□□□□ 0.25
CCBE1-203ENST00000589116 CPS1P31327 1500 aa16.6■□□□□ 0.25
CCBE1-203ENST00000589116 TRAK1Q9UPV9 953 aa16.6■□□□□ 0.25
CCBE1-203ENST00000589116 CEP170BQ9Y4F5 1589 aaPredicted RBP16.6■□□□□ 0.25
CCBE1-203ENST00000589116 DLC1Q96QB1 1528 aa16.59■□□□□ 0.25
CCBE1-203ENST00000589116 MYOM1P52179 1685 aa16.59■□□□□ 0.25
CCBE1-203ENST00000589116 SENP3Q9H4L4 574 aaPredicted RBP16.59■□□□□ 0.25
CCBE1-203ENST00000589116 PRKRIP1Q9H875 184 aaPredicted RBP16.58■□□□□ 0.24
CCBE1-203ENST00000589116 PLEKHG1Q9ULL1 1385 aa16.57■□□□□ 0.24
CCBE1-203ENST00000589116 KNDC1Q76NI1 1749 aa16.56■□□□□ 0.24
CCBE1-203ENST00000589116 LRPPRCP42704 1394 aaKnown RBP16.56■□□□□ 0.24
CCBE1-203ENST00000589116 KTN1Q86UP2 1357 aaKnown RBP16.56■□□□□ 0.24
CCBE1-203ENST00000589116 THEMISQ8N1K5 641 aaPredicted RBP16.56■□□□□ 0.24
CCBE1-203ENST00000589116 PUS7Q96PZ0 661 aaKnown RBP16.54■□□□□ 0.24
CCBE1-203ENST00000589116 EID1Q9Y6B2 187 aa16.54■□□□□ 0.24
CCBE1-203ENST00000589116 ABCC11Q96J66 1382 aa16.53■□□□□ 0.24
CCBE1-203ENST00000589116 TECPR2O15040 1411 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms